These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

450 related articles for article (PubMed ID: 22570420)

  • 1. COFACTOR: an accurate comparative algorithm for structure-based protein function annotation.
    Roy A; Yang J; Zhang Y
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W471-7. PubMed ID: 22570420
    [TBL] [Abstract][Full Text] [Related]  

  • 2. COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.
    Zhang C; Freddolino PL; Zhang Y
    Nucleic Acids Res; 2017 Jul; 45(W1):W291-W299. PubMed ID: 28472402
    [TBL] [Abstract][Full Text] [Related]  

  • 3. I-TASSER server: new development for protein structure and function predictions.
    Yang J; Zhang Y
    Nucleic Acids Res; 2015 Jul; 43(W1):W174-81. PubMed ID: 25883148
    [TBL] [Abstract][Full Text] [Related]  

  • 4. I-TASSER: a unified platform for automated protein structure and function prediction.
    Roy A; Kucukural A; Zhang Y
    Nat Protoc; 2010 Apr; 5(4):725-38. PubMed ID: 20360767
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.
    Zhang C; Zheng W; Freddolino PL; Zhang Y
    J Mol Biol; 2018 Jul; 430(15):2256-2265. PubMed ID: 29534977
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.
    Yang J; Roy A; Zhang Y
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D1096-103. PubMed ID: 23087378
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
    Zheng W; Wuyun Q; Zhou X; Li Y; Freddolino PL; Zhang Y
    Nucleic Acids Res; 2022 Jul; 50(W1):W454-W464. PubMed ID: 35420129
    [TBL] [Abstract][Full Text] [Related]  

  • 8. LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
    Zheng W; Zhang C; Wuyun Q; Pearce R; Li Y; Zhang Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W429-W436. PubMed ID: 31081035
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.
    Yang J; Roy A; Zhang Y
    Bioinformatics; 2013 Oct; 29(20):2588-95. PubMed ID: 23975762
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement.
    Roy A; Zhang Y
    Structure; 2012 Jun; 20(6):987-97. PubMed ID: 22560732
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LS-align: an atom-level, flexible ligand structural alignment algorithm for high-throughput virtual screening.
    Hu J; Liu Z; Yu DJ; Zhang Y
    Bioinformatics; 2018 Jul; 34(13):2209-2218. PubMed ID: 29462237
    [TBL] [Abstract][Full Text] [Related]  

  • 12. IntFOLD: an integrated web resource for high performance protein structure and function prediction.
    McGuffin LJ; Adiyaman R; Maghrabi AHA; Shuid AN; Brackenridge DA; Nealon JO; Philomina LS
    Nucleic Acids Res; 2019 Jul; 47(W1):W408-W413. PubMed ID: 31045208
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals.
    Hu X; Dong Q; Yang J; Zhang Y
    Bioinformatics; 2016 Nov; 32(21):3260-3269. PubMed ID: 27378301
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
    Roche DB; Tetchner SJ; McGuffin LJ
    BMC Bioinformatics; 2011 May; 12():160. PubMed ID: 21575183
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A protocol for computer-based protein structure and function prediction.
    Roy A; Xu D; Poisson J; Zhang Y
    J Vis Exp; 2011 Nov; (57):e3259. PubMed ID: 22082966
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure modeling of all identified G protein-coupled receptors in the human genome.
    Zhang Y; Devries ME; Skolnick J
    PLoS Comput Biol; 2006 Feb; 2(2):e13. PubMed ID: 16485037
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PocketAnnotate: towards site-based function annotation.
    Anand P; Yeturu K; Chandra N
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W400-8. PubMed ID: 22618878
    [TBL] [Abstract][Full Text] [Related]  

  • 18. I-TASSER server for protein 3D structure prediction.
    Zhang Y
    BMC Bioinformatics; 2008 Jan; 9():40. PubMed ID: 18215316
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.
    Brylinski M; Skolnick J
    Proc Natl Acad Sci U S A; 2008 Jan; 105(1):129-34. PubMed ID: 18165317
    [TBL] [Abstract][Full Text] [Related]  

  • 20. eFindSite: improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands.
    Brylinski M; Feinstein WP
    J Comput Aided Mol Des; 2013 Jun; 27(6):551-67. PubMed ID: 23838840
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.