163 related articles for article (PubMed ID: 22573174)
1. SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures.
Nadzirin N; Gardiner EJ; Willett P; Artymiuk PJ; Firdaus-Raih M
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W380-6. PubMed ID: 22573174
[TBL] [Abstract][Full Text] [Related]
2. NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules.
Hamdani HY; Appasamy SD; Willett P; Artymiuk PJ; Firdaus-Raih M
Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W35-41. PubMed ID: 22661578
[TBL] [Abstract][Full Text] [Related]
3. GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA.
Ghani NSA; Emrizal R; Moffit SM; Hamdani HY; Ramlan EI; Firdaus-Raih M
Nucleic Acids Res; 2022 Jul; 50(W1):W375-W383. PubMed ID: 35639505
[TBL] [Abstract][Full Text] [Related]
4. IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank.
Nadzirin N; Willett P; Artymiuk PJ; Firdaus-Raih M
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W432-40. PubMed ID: 23716645
[TBL] [Abstract][Full Text] [Related]
5. A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures.
Artymiuk PJ; Poirrette AR; Grindley HM; Rice DW; Willett P
J Mol Biol; 1994 Oct; 243(2):327-44. PubMed ID: 7932758
[TBL] [Abstract][Full Text] [Related]
6. Searching for patterns of amino acids in 3D protein structures.
Spriggs RV; Artymiuk PJ; Willett P
J Chem Inf Comput Sci; 2003; 43(2):412-21. PubMed ID: 12653503
[TBL] [Abstract][Full Text] [Related]
7. RASMOT-3D PRO: a 3D motif search webserver.
Debret G; Martel A; Cuniasse P
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W459-64. PubMed ID: 19417073
[TBL] [Abstract][Full Text] [Related]
8. 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.
Bennett SP; Lu L; Brutlag DL
Nucleic Acids Res; 2003 Jul; 31(13):3328-32. PubMed ID: 12824319
[TBL] [Abstract][Full Text] [Related]
9. FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
Wernersson R; Rapacki K; Staerfeldt HH; Sackett PW; Mølgaard A
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W84-8. PubMed ID: 16845115
[TBL] [Abstract][Full Text] [Related]
10. The SuMo server: 3D search for protein functional sites.
Jambon M; Andrieu O; Combet C; Deléage G; Delfaud F; Geourjon C
Bioinformatics; 2005 Oct; 21(20):3929-30. PubMed ID: 16141250
[TBL] [Abstract][Full Text] [Related]
11. BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.
Ryu J; Lee M; Cha J; Laskowski RA; Ryu SE; Kim DS
Nucleic Acids Res; 2016 Jul; 44(W1):W416-23. PubMed ID: 27151195
[TBL] [Abstract][Full Text] [Related]
12. COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.
Firdaus-Raih M; Hamdani HY; Nadzirin N; Ramlan EI; Willett P; Artymiuk PJ
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W382-8. PubMed ID: 24831543
[TBL] [Abstract][Full Text] [Related]
13. CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures.
Vlahovicek K; Pintar A; Parthasarathi L; Carugo O; Pongor S
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W252-4. PubMed ID: 15980464
[TBL] [Abstract][Full Text] [Related]
14. Protein Repair and Analysis Server: A Web Server to Repair PDB Structures, Add Missing Heavy Atoms and Hydrogen Atoms, and Assign Secondary Structures by Amide Interactions.
Nnyigide OS; Nnyigide TO; Lee SG; Hyun K
J Chem Inf Model; 2022 Sep; 62(17):4232-4246. PubMed ID: 36000562
[TBL] [Abstract][Full Text] [Related]
15. CX, DPX, and PCW: Web Servers for the Visualization of Interior and Protruding Regions of Protein Structures in 3D and 1D.
Ligeti B; Vera R; Juhász J; Pongor S
Methods Mol Biol; 2017; 1484():301-309. PubMed ID: 27787834
[TBL] [Abstract][Full Text] [Related]
16. PDB explorer -- a web based algorithm for protein annotation viewer and 3D visualization.
Nayarisseri A; Shardiwal RK; Yadav M; Kanungo N; Singh P; Shah P; Ahmed S
Interdiscip Sci; 2014 Dec; 6(4):279-84. PubMed ID: 25118648
[TBL] [Abstract][Full Text] [Related]
17. Smoothing 3D protein structure motifs through graph mining and amino acid similarities.
Dhifli W; Saidi R; Nguifo EM
J Comput Biol; 2014 Feb; 21(2):162-72. PubMed ID: 24117330
[TBL] [Abstract][Full Text] [Related]
18. 3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.
Bennett SP; Nevill-Manning CG; Brutlag DL
Bioinformatics; 2003 Mar; 19(4):541-2. PubMed ID: 12611811
[TBL] [Abstract][Full Text] [Related]
19. pdbFun: mass selection and fast comparison of annotated PDB residues.
Ausiello G; Zanzoni A; Peluso D; Via A; Helmer-Citterich M
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W133-7. PubMed ID: 15980442
[TBL] [Abstract][Full Text] [Related]
20. RAG-3D: a search tool for RNA 3D substructures.
Zahran M; Sevim Bayrak C; Elmetwaly S; Schlick T
Nucleic Acids Res; 2015 Oct; 43(19):9474-88. PubMed ID: 26304547
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]