These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

246 related articles for article (PubMed ID: 22581176)

  • 1. Software support for SBGN maps: SBGN-ML and LibSBGN.
    van Iersel MP; Villéger AC; Czauderna T; Boyd SE; Bergmann FT; Luna A; Demir E; Sorokin A; Dogrusoz U; Matsuoka Y; Funahashi A; Aladjem MI; Mi H; Moodie SL; Kitano H; Le Novère N; Schreiber F
    Bioinformatics; 2012 Aug; 28(15):2016-21. PubMed ID: 22581176
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Systems biology graphical notation markup language (SBGNML) version 0.3.
    Bergmann FT; Czauderna T; Dogrusoz U; Rougny A; Dräger A; Touré V; Mazein A; Blinov ML; Luna A
    J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32568733
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Editing, validating and translating of SBGN maps.
    Czauderna T; Klukas C; Schreiber F
    Bioinformatics; 2010 Sep; 26(18):2340-1. PubMed ID: 20628075
    [TBL] [Abstract][Full Text] [Related]  

  • 4. sbgntikz-a TikZ library to draw SBGN maps.
    Rougny A
    Bioinformatics; 2019 Nov; 35(21):4499-4500. PubMed ID: 31070720
    [TBL] [Abstract][Full Text] [Related]  

  • 5. LibSBML: an API library for SBML.
    Bornstein BJ; Keating SM; Jouraku A; Hucka M
    Bioinformatics; 2008 Mar; 24(6):880-1. PubMed ID: 18252737
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.
    Beltrame L; Calura E; Popovici RR; Rizzetto L; Guedez DR; Donato M; Romualdi C; Draghici S; Cavalieri D
    Bioinformatics; 2011 Aug; 27(15):2127-33. PubMed ID: 21653523
    [TBL] [Abstract][Full Text] [Related]  

  • 7. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.
    Balaur I; Roy L; Mazein A; Karaca SG; Dogrusoz U; Barillot E; Zinovyev A
    Bioinformatics; 2020 Apr; 36(8):2620-2622. PubMed ID: 31904823
    [TBL] [Abstract][Full Text] [Related]  

  • 8. StonPy: a tool to parse and query collections of SBGN maps in a graph database.
    Rougny A; Balaur I; Luna A; Mazein A
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36897014
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CySBGN: a Cytoscape plug-in to integrate SBGN maps.
    Gonçalves E; van Iersel M; Saez-Rodriguez J
    BMC Bioinformatics; 2013 Jan; 14():17. PubMed ID: 23324051
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Translation of SBGN maps: Process Description to Activity Flow.
    Vogt T; Czauderna T; Schreiber F
    BMC Syst Biol; 2013 Oct; 7():115. PubMed ID: 24176088
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An algorithm for automated layout of process description maps drawn in SBGN.
    Genc B; Dogrusoz U
    Bioinformatics; 2016 Jan; 32(1):77-84. PubMed ID: 26363029
    [TBL] [Abstract][Full Text] [Related]  

  • 12. JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
    Rodriguez N; Thomas A; Watanabe L; Vazirabad IY; Kofia V; Gómez HF; Mittag F; Matthes J; Rudolph J; Wrzodek F; Netz E; Diamantikos A; Eichner J; Keller R; Wrzodek C; Fröhlich S; Lewis NE; Myers CJ; Le Novère N; Palsson BØ; Hucka M; Dräger A
    Bioinformatics; 2015 Oct; 31(20):3383-6. PubMed ID: 26079347
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
    Mi H; Schreiber F; Moodie S; Czauderna T; Demir E; Haw R; Luna A; Le Novère N; Sorokin A; Villéger A
    J Integr Bioinform; 2015 Sep; 12(2):265. PubMed ID: 26528563
    [TBL] [Abstract][Full Text] [Related]  

  • 14. JSBML: a flexible Java library for working with SBML.
    Dräger A; Rodriguez N; Dumousseau M; Dörr A; Wrzodek C; Le Novère N; Zell A; Hucka M
    Bioinformatics; 2011 Aug; 27(15):2167-8. PubMed ID: 21697129
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MOCCASIN: converting MATLAB ODE models to SBML.
    Gómez HF; Hucka M; Keating SM; Nudelman G; Iber D; Sealfon SC
    Bioinformatics; 2016 Jun; 32(12):1905-6. PubMed ID: 26861819
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Scramble conversion tool.
    Bonfield JK
    Bioinformatics; 2014 Oct; 30(19):2818-9. PubMed ID: 24930138
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Arcadia: a visualization tool for metabolic pathways.
    Villéger AC; Pettifer SR; Kell DB
    Bioinformatics; 2010 Jun; 26(11):1470-1. PubMed ID: 20453003
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
    Flórez LA; Lammers CR; Michna R; Stülke J
    Bioinformatics; 2010 Dec; 26(23):2997-9. PubMed ID: 20947526
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.
    Junker A; Rohn H; Czauderna T; Klukas C; Hartmann A; Schreiber F
    Nat Protoc; 2012 Mar; 7(3):579-93. PubMed ID: 22383037
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
    Krause F; Schulz M; Ripkens B; Flöttmann M; Krantz M; Klipp E; Handorf T
    Bioinformatics; 2013 Jun; 29(11):1467-8. PubMed ID: 23574737
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.