432 related articles for article (PubMed ID: 22589127)
1. Detection and quantification of alternative splicing variants using RNA-seq.
Bryant DW; Priest HD; Mockler TC
Methods Mol Biol; 2012; 883():97-110. PubMed ID: 22589127
[TBL] [Abstract][Full Text] [Related]
2. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
Park JW; Tokheim C; Shen S; Xing Y
Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975
[TBL] [Abstract][Full Text] [Related]
3. Computational analysis of RNA-seq.
Givan SA; Bottoms CA; Spollen WG
Methods Mol Biol; 2012; 883():201-19. PubMed ID: 22589136
[TBL] [Abstract][Full Text] [Related]
4. RNA-Seq: revelation of the messengers.
Van Verk MC; Hickman R; Pieterse CM; Van Wees SC
Trends Plant Sci; 2013 Apr; 18(4):175-9. PubMed ID: 23481128
[TBL] [Abstract][Full Text] [Related]
5. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.
Vijay N; Poelstra JW; Künstner A; Wolf JB
Mol Ecol; 2013 Feb; 22(3):620-34. PubMed ID: 22998089
[TBL] [Abstract][Full Text] [Related]
6. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
[TBL] [Abstract][Full Text] [Related]
7. An overview of the analysis of next generation sequencing data.
Gogol-Döring A; Chen W
Methods Mol Biol; 2012; 802():249-57. PubMed ID: 22130885
[TBL] [Abstract][Full Text] [Related]
8. Riboswitch discovery by combining RNA-seq and genome-wide identification of transcriptional start sites.
Rosinski-Chupin I; Soutourina O; Martin-Verstraete I
Methods Enzymol; 2014; 549():3-27. PubMed ID: 25432742
[TBL] [Abstract][Full Text] [Related]
9. Next-generation sequencing applied to flower development: RNA-seq.
He J; Jiao Y
Methods Mol Biol; 2014; 1110():401-11. PubMed ID: 24395272
[TBL] [Abstract][Full Text] [Related]
10. High-throughput RNA-seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids.
Ng DW; Shi X; Nah G; Chen ZJ
Methods Mol Biol; 2014; 1112():33-48. PubMed ID: 24478006
[TBL] [Abstract][Full Text] [Related]
11. Transcriptome analysis using RNA-Seq.
Hoeijmakers WA; Bártfai R; Stunnenberg HG
Methods Mol Biol; 2013; 923():221-39. PubMed ID: 22990781
[TBL] [Abstract][Full Text] [Related]
12. RNA sequencing: from sample preparation to analysis.
Maekawa S; Suzuki A; Sugano S; Suzuki Y
Methods Mol Biol; 2014; 1164():51-65. PubMed ID: 24927835
[TBL] [Abstract][Full Text] [Related]
13. Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.
Bräutigam A; Mullick T; Schliesky S; Weber AP
J Exp Bot; 2011 May; 62(9):3093-102. PubMed ID: 21398430
[TBL] [Abstract][Full Text] [Related]
14. mRNA enrichment protocols determine the quantification characteristics of external RNA spike-in controls in RNA-Seq studies.
Qing T; Yu Y; Du T; Shi L
Sci China Life Sci; 2013 Feb; 56(2):134-42. PubMed ID: 23393029
[TBL] [Abstract][Full Text] [Related]
15. SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing.
Pulyakhina I; Gazzoli I; 't Hoen PA; Verwey N; den Dunnen JT; Aartsma-Rus A; Laros JF
Nucleic Acids Res; 2015 Jul; 43(12):e80. PubMed ID: 25800735
[TBL] [Abstract][Full Text] [Related]
16. Transcript Profiling Using Long-Read Sequencing Technologies.
Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
[TBL] [Abstract][Full Text] [Related]
17. Transcriptomic analysis of Staphylococcus aureus using microarray and advanced next-generation RNA-seq technologies.
Lei T; Becker A; Ji Y
Methods Mol Biol; 2014; 1085():213-29. PubMed ID: 24085699
[TBL] [Abstract][Full Text] [Related]
18. RNA Sequencing and Analysis.
Kukurba KR; Montgomery SB
Cold Spring Harb Protoc; 2015 Apr; 2015(11):951-69. PubMed ID: 25870306
[TBL] [Abstract][Full Text] [Related]
19. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Pan Q; Shai O; Lee LJ; Frey BJ; Blencowe BJ
Nat Genet; 2008 Dec; 40(12):1413-5. PubMed ID: 18978789
[TBL] [Abstract][Full Text] [Related]
20. Construction of Trypanosoma brucei Illumina RNA-Seq libraries enriched for transcript ends.
Kolev NG; Ullu E; Tschudi C
Methods Mol Biol; 2015; 1201():165-75. PubMed ID: 25388113
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
