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7. SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data. Ding J; Hu H; Li X Nucleic Acids Res; 2014 Mar; 42(5):e35. PubMed ID: 24322294 [TBL] [Abstract][Full Text] [Related]
8. Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment. Worsley Hunt R; Mathelier A; Del Peso L; Wasserman WW BMC Genomics; 2014 Jun; 15(1):472. PubMed ID: 24927817 [TBL] [Abstract][Full Text] [Related]
10. A Fast Cluster Motif Finding Algorithm for ChIP-Seq Data Sets. Zhang Y; Wang P Biomed Res Int; 2015; 2015():218068. PubMed ID: 26236718 [TBL] [Abstract][Full Text] [Related]
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12. Motif-based analysis of large nucleotide data sets using MEME-ChIP. Ma W; Noble WS; Bailey TL Nat Protoc; 2014; 9(6):1428-50. PubMed ID: 24853928 [TBL] [Abstract][Full Text] [Related]
14. A new exhaustive method and strategy for finding motifs in ChIP-enriched regions. Jia C; Carson MB; Wang Y; Lin Y; Lu H PLoS One; 2014; 9(1):e86044. PubMed ID: 24475069 [TBL] [Abstract][Full Text] [Related]
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16. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Jothi R; Cuddapah S; Barski A; Cui K; Zhao K Nucleic Acids Res; 2008 Sep; 36(16):5221-31. PubMed ID: 18684996 [TBL] [Abstract][Full Text] [Related]
17. Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data. Eggeling R; Roos T; Myllymäki P; Grosse I BMC Bioinformatics; 2015 Nov; 16():375. PubMed ID: 26552868 [TBL] [Abstract][Full Text] [Related]
18. EXTREME: an online EM algorithm for motif discovery. Quang D; Xie X Bioinformatics; 2014 Jun; 30(12):1667-73. PubMed ID: 24532725 [TBL] [Abstract][Full Text] [Related]
19. Direct ChIP-Seq significance analysis improves target prediction. Bansal M; Mendiratta G; Anand S; Kushwaha R; Kim R; Kustagi M; Iyer A; Chaganti RS; Califano A; Sumazin P BMC Genomics; 2015; 16 Suppl 5(Suppl 5):S4. PubMed ID: 26040656 [TBL] [Abstract][Full Text] [Related]
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