These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

249 related articles for article (PubMed ID: 22611296)

  • 21. ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.
    Hulstaert N; Shofstahl J; Sachsenberg T; Walzer M; Barsnes H; Martens L; Perez-Riverol Y
    J Proteome Res; 2020 Jan; 19(1):537-542. PubMed ID: 31755270
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.
    Qi D; Zhang H; Fan J; Perkins S; Pisconti A; Simpson DM; Bessant C; Hubbard S; Jones AR
    Proteomics; 2015 Sep; 15(18):3152-62. PubMed ID: 26037908
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.
    Morisawa H; Hirota M; Toda T
    BMC Bioinformatics; 2006 Oct; 7():430. PubMed ID: 17018156
    [TBL] [Abstract][Full Text] [Related]  

  • 24. The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.
    Menschaert G; Wang X; Jones AR; Ghali F; Fenyö D; Olexiouk V; Zhang B; Deutsch EW; Ternent T; Vizcaíno JA
    Genome Biol; 2018 Jan; 19(1):12. PubMed ID: 29386051
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.
    McDonald WH; Tabb DL; Sadygov RG; MacCoss MJ; Venable J; Graumann J; Johnson JR; Cociorva D; Yates JR
    Rapid Commun Mass Spectrom; 2004; 18(18):2162-8. PubMed ID: 15317041
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
    Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA
    J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The jmzQuantML programming interface and validator for the mzQuantML data standard.
    Qi D; Krishna R; Jones AR
    Proteomics; 2014 Mar; 14(6):685-8. PubMed ID: 24453188
    [TBL] [Abstract][Full Text] [Related]  

  • 28. qcML: an exchange format for quality control metrics from mass spectrometry experiments.
    Walzer M; Pernas LE; Nasso S; Bittremieux W; Nahnsen S; Kelchtermans P; Pichler P; van den Toorn HW; Staes A; Vandenbussche J; Mazanek M; Taus T; Scheltema RA; Kelstrup CD; Gatto L; van Breukelen B; Aiche S; Valkenborg D; Laukens K; Lilley KS; Olsen JV; Heck AJ; Mechtler K; Aebersold R; Gevaert K; Vizcaíno JA; Hermjakob H; Kohlbacher O; Martens L
    Mol Cell Proteomics; 2014 Aug; 13(8):1905-13. PubMed ID: 24760958
    [TBL] [Abstract][Full Text] [Related]  

  • 29. multiplierz: an extensible API based desktop environment for proteomics data analysis.
    Parikh JR; Askenazi M; Ficarro SB; Cashorali T; Webber JT; Blank NC; Zhang Y; Marto JA
    BMC Bioinformatics; 2009 Oct; 10():364. PubMed ID: 19874609
    [TBL] [Abstract][Full Text] [Related]  

  • 30. jmzTab: a java interface to the mzTab data standard.
    Xu QW; Griss J; Wang R; Jones AR; Hermjakob H; Vizcaíno JA
    Proteomics; 2014 Jun; 14(11):1328-32. PubMed ID: 24659499
    [TBL] [Abstract][Full Text] [Related]  

  • 31. mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets.
    Bouyssié D; Dubois M; Nasso S; Gonzalez de Peredo A; Burlet-Schiltz O; Aebersold R; Monsarrat B
    Mol Cell Proteomics; 2015 Mar; 14(3):771-81. PubMed ID: 25505153
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Numerical compression schemes for proteomics mass spectrometry data.
    Teleman J; Dowsey AW; Gonzalez-Galarza FF; Perkins S; Pratt B; Röst HL; Malmström L; Malmström J; Jones AR; Deutsch EW; Levander F
    Mol Cell Proteomics; 2014 Jun; 13(6):1537-42. PubMed ID: 24677029
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.
    Li F; Li M; Xiao Z; Zhang P; Li J; Chen Z
    BMC Bioinformatics; 2006 Jan; 7():13. PubMed ID: 16403238
    [TBL] [Abstract][Full Text] [Related]  

  • 34. TOPP--the OpenMS proteomics pipeline.
    Kohlbacher O; Reinert K; Gröpl C; Lange E; Pfeifer N; Schulz-Trieglaff O; Sturm M
    Bioinformatics; 2007 Jan; 23(2):e191-7. PubMed ID: 17237091
    [TBL] [Abstract][Full Text] [Related]  

  • 35. NCBI Peptidome: a new repository for mass spectrometry proteomics data.
    Ji L; Barrett T; Ayanbule O; Troup DB; Rudnev D; Muertter RN; Tomashevsky M; Soboleva A; Slotta DJ
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D731-5. PubMed ID: 19942688
    [TBL] [Abstract][Full Text] [Related]  

  • 36. mzML--a community standard for mass spectrometry data.
    Martens L; Chambers M; Sturm M; Kessner D; Levander F; Shofstahl J; Tang WH; Römpp A; Neumann S; Pizarro AD; Montecchi-Palazzi L; Tasman N; Coleman M; Reisinger F; Souda P; Hermjakob H; Binz PA; Deutsch EW
    Mol Cell Proteomics; 2011 Jan; 10(1):R110.000133. PubMed ID: 20716697
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The UAB Proteomics Database.
    Hill A; Kim H
    Bioinformatics; 2003 Nov; 19(16):2149-51. PubMed ID: 14594723
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.
    MacLean B; Tomazela DM; Shulman N; Chambers M; Finney GL; Frewen B; Kern R; Tabb DL; Liebler DC; MacCoss MJ
    Bioinformatics; 2010 Apr; 26(7):966-8. PubMed ID: 20147306
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MASCOT HTML and XML parser: an implementation of a novel object model for protein identification data.
    Yang CG; Granite SJ; Van Eyk JE; Winslow RL
    Proteomics; 2006 Nov; 6(21):5688-93. PubMed ID: 17006878
    [TBL] [Abstract][Full Text] [Related]  

  • 40. An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.
    Stanislaus R; Jiang LH; Swartz M; Arthur J; Almeida JS
    BMC Bioinformatics; 2004 Jan; 5():9. PubMed ID: 15005801
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.