These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 22618877)

  • 1. TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage.
    Brandt BW; Bonder MJ; Huse SM; Zaura E
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W82-7. PubMed ID: 22618877
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome.
    Nossa CW; Oberdorf WE; Yang L; Aas JA; Paster BJ; Desantis TZ; Brodie EL; Malamud D; Poles MA; Pei Z
    World J Gastroenterol; 2010 Sep; 16(33):4135-44. PubMed ID: 20806429
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TaxMan: a taxonomic database manager.
    Jones M; Blaxter M
    BMC Bioinformatics; 2006 Dec; 7():536. PubMed ID: 17176465
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data.
    Agnihotry S; Sarangi AN; Aggarwal R
    Indian J Med Res; 2020 Jan; 151(1):93-103. PubMed ID: 32134020
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.
    Huse SM; Dethlefsen L; Huber JA; Mark Welch D; Relman DA; Sogin ML
    PLoS Genet; 2008 Nov; 4(11):e1000255. PubMed ID: 19023400
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.
    Guillou L; Bachar D; Audic S; Bass D; Berney C; Bittner L; Boutte C; Burgaud G; de Vargas C; Decelle J; Del Campo J; Dolan JR; Dunthorn M; Edvardsen B; Holzmann M; Kooistra WH; Lara E; Le Bescot N; Logares R; Mahé F; Massana R; Montresor M; Morard R; Not F; Pawlowski J; Probert I; Sauvadet AL; Siano R; Stoeck T; Vaulot D; Zimmermann P; Christen R
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D597-604. PubMed ID: 23193267
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TUIT, a BLAST-based tool for taxonomic classification of nucleotide sequences.
    Tuzhikov A; Panchin A; Shestopalov VI
    Biotechniques; 2014; 56(2):78-84. PubMed ID: 24502797
    [TBL] [Abstract][Full Text] [Related]  

  • 8. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
    Quast C; Pruesse E; Yilmaz P; Gerken J; Schweer T; Yarza P; Peplies J; Glöckner FO
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D590-6. PubMed ID: 23193283
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences.
    Soergel DA; Dey N; Knight R; Brenner SE
    ISME J; 2012 Jul; 6(7):1440-4. PubMed ID: 22237546
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.
    Yilmaz P; Parfrey LW; Yarza P; Gerken J; Pruesse E; Quast C; Schweer T; Peplies J; Ludwig W; Glöckner FO
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D643-8. PubMed ID: 24293649
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.
    Cole JR; Chai B; Farris RJ; Wang Q; Kulam SA; McGarrell DM; Garrity GM; Tiedje JM
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D294-6. PubMed ID: 15608200
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs.
    Mizrahi-Man O; Davenport ER; Gilad Y
    PLoS One; 2013; 8(1):e53608. PubMed ID: 23308262
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ribosomal Database Project: data and tools for high throughput rRNA analysis.
    Cole JR; Wang Q; Fish JA; Chai B; McGarrell DM; Sun Y; Brown CT; Porras-Alfaro A; Kuske CR; Tiedje JM
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D633-42. PubMed ID: 24288368
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
    Wang Q; Garrity GM; Tiedje JM; Cole JR
    Appl Environ Microbiol; 2007 Aug; 73(16):5261-7. PubMed ID: 17586664
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
    Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
    BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.
    Schäffer AA; McVeigh R; Robbertse B; Schoch CL; Johnston A; Underwood BA; Karsch-Mizrachi I; Nawrocki EP
    BMC Bioinformatics; 2021 Aug; 22(1):400. PubMed ID: 34384346
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species.
    Turenne CY; Tschetter L; Wolfe J; Kabani A
    J Clin Microbiol; 2001 Oct; 39(10):3637-48. PubMed ID: 11574585
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Tracembler--software for in-silico chromosome walking in unassembled genomes.
    Dong Q; Wilkerson MD; Brendel V
    BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.