These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 22619105)

  • 1. Automated identification of binding sites for phosphorylated ligands in protein structures.
    Ghersi D; Sanchez R
    Proteins; 2012 Oct; 80(10):2347-58. PubMed ID: 22619105
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Lessons from nature: On the molecular recognition elements of the phosphoprotein binding-domains.
    Roque AC; Lowe CR
    Biotechnol Bioeng; 2005 Sep; 91(5):546-55. PubMed ID: 15959902
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures.
    Shin JM; Cho DH
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D238-41. PubMed ID: 15608186
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural studies on Mycobacterium tuberculosis HddA enzyme using small angle X-ray scattering and dynamics simulation techniques.
    Karan S; Behl A; Sagar A; Bandyopadhyay A; Saxena AK
    Int J Biol Macromol; 2021 Feb; 171():28-36. PubMed ID: 33412198
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FHA domains: Phosphopeptide binding and beyond.
    Almawi AW; Matthews LA; Guarné A
    Prog Biophys Mol Biol; 2017 Aug; 127():105-110. PubMed ID: 27939759
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Charge environments around phosphorylation sites in proteins.
    Kitchen J; Saunders RE; Warwicker J
    BMC Struct Biol; 2008 Mar; 8():19. PubMed ID: 18366741
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites.
    Weill N; Rognan D
    J Chem Inf Model; 2010 Jan; 50(1):123-35. PubMed ID: 20058856
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ATP-phosphopeptide conjugates as inhibitors of Src tyrosine kinases.
    Nam NH; Lee S; Ye G; Sun G; Parang K
    Bioorg Med Chem; 2004 Nov; 12(22):5753-66. PubMed ID: 15498652
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms.
    Jian JW; Elumalai P; Pitti T; Wu CY; Tsai KC; Chang JY; Peng HP; Yang AS
    PLoS One; 2016; 11(8):e0160315. PubMed ID: 27513851
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.
    Pinkse MW; Mohammed S; Gouw JW; van Breukelen B; Vos HR; Heck AJ
    J Proteome Res; 2008 Feb; 7(2):687-97. PubMed ID: 18034456
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MetaPocket: a meta approach to improve protein ligand binding site prediction.
    Huang B
    OMICS; 2009 Aug; 13(4):325-30. PubMed ID: 19645590
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rational Molecular Design of Potent PLK1 PBD Domain-binding Phosphopeptides Using Preferential Amino Acid Building Blocks.
    Mao XL; Wang KF; Zhu F; Pan ZH; Wu GM; Zhu HY
    Chem Biodivers; 2016 Aug; 13(8):1103-10. PubMed ID: 27450535
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Binding balls: fast detection of binding sites using a property of spherical Fourier transform.
    Comin M; Guerra C; Dellaert F
    J Comput Biol; 2009 Nov; 16(11):1577-91. PubMed ID: 19958084
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of novel phosphorylation sites on postsynaptic density proteins.
    Jaffe H; Vinade L; Dosemeci A
    Biochem Biophys Res Commun; 2004 Aug; 321(1):210-8. PubMed ID: 15358237
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of site-directed spin labeling for characterizing protein-ligand complexes using simulated restraints.
    Constantine KL
    Biophys J; 2001 Sep; 81(3):1275-84. PubMed ID: 11509344
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites.
    Binkowski TA; Joachimiak A
    BMC Struct Biol; 2008 Oct; 8():45. PubMed ID: 18954462
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Prediction of ligand-binding sites of proteins by molecular docking calculation for a random ligand library.
    Fukunishi Y; Nakamura H
    Protein Sci; 2011 Jan; 20(1):95-106. PubMed ID: 21064162
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of shc as the primary protein binding to the tyrosine-phosphorylated beta 3 subunit of alpha IIbbeta 3 during outside-in integrin platelet signaling.
    Cowan KJ; Law DA; Phillips DR
    J Biol Chem; 2000 Nov; 275(46):36423-9. PubMed ID: 10964917
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A method to detect important residues using protein binding site comparison.
    Park K; Kim D
    Genome Inform; 2006; 17(2):216-25. PubMed ID: 17503394
    [TBL] [Abstract][Full Text] [Related]  

  • 20. NMR studies for identifying phosphopeptide ligands of the HIV-1 protein Vpu binding to the F-box protein beta-TrCP.
    Evrard-Todeschi N; Gharbi-Benarous J; Bertho G; Coadou G; Megy S; Benarous R; Girault JP
    Peptides; 2006 Jan; 27(1):194-210. PubMed ID: 16165251
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.