These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

100 related articles for article (PubMed ID: 22622698)

  • 1. Computational study of ligand binding in lipid transfer proteins: Structures, interfaces, and free energies of protein-lipid complexes.
    Pacios LF; Gómez-Casado C; Tordesillas L; Palacín A; Sánchez-Monge R; Díaz-Perales A
    J Comput Chem; 2012 Aug; 33(22):1831-44. PubMed ID: 22622698
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
    Han GW; Lee JY; Song HK; Chang C; Min K; Moon J; Shin DH; Kopka ML; Sawaya MR; Yuan HS; Kim TD; Choe J; Lim D; Moon HJ; Suh SW
    J Mol Biol; 2001 Apr; 308(2):263-78. PubMed ID: 11327766
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics simulations of barley and maize lipid transfer proteins show different ligand binding preferences in agreement with experimental data.
    Smith LJ; Roby Y; Allison JR; van Gunsteren WF
    Biochemistry; 2013 Jul; 52(30):5029-38. PubMed ID: 23834513
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Binding mechanism of nonspecific lipid transfer proteins and their role in plant defense.
    Cheng CS; Samuel D; Liu YJ; Shyu JC; Lai SM; Lin KF; Lyu PC
    Biochemistry; 2004 Nov; 43(43):13628-36. PubMed ID: 15504025
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mutagenesis study of rice nonspecific lipid transfer protein 2 reveals residues that contribute to structure and ligand binding.
    Cheng CS; Chen MN; Lai YT; Chen T; Lin KF; Liu YJ; Lyu PC
    Proteins; 2008 Feb; 70(3):695-706. PubMed ID: 17729272
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Barley lipid-transfer protein complexed with palmitoyl CoA: the structure reveals a hydrophobic binding site that can expand to fit both large and small lipid-like ligands.
    Lerche MH; Kragelund BB; Bech LM; Poulsen FM
    Structure; 1997 Feb; 5(2):291-306. PubMed ID: 9032083
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling, docking and dynamics simulations of a non-specific lipid transfer protein from Peganum harmala L.
    Shi Z; Wang ZJ; Xu HL; Tian Y; Li X; Bao JK; Sun SR; Yue BS
    Comput Biol Chem; 2013 Dec; 47():56-65. PubMed ID: 23891721
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of end-point continuum-solvation methods for the calculation of protein-ligand binding free energies.
    Genheden S; Ryde U
    Proteins; 2012 May; 80(5):1326-42. PubMed ID: 22274991
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Effects of ligand binding on the dynamics of rice nonspecific lipid transfer protein 1: a model from molecular simulations.
    Lai YT; Cheng CS; Liu YN; Liu YJ; Lyu PC
    Proteins; 2008 Sep; 72(4):1189-98. PubMed ID: 18338386
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Characterization and structural analyses of nonspecific lipid transfer protein 1 from mung bean.
    Lin KF; Liu YN; Hsu ST; Samuel D; Cheng CS; Bonvin AM; Lyu PC
    Biochemistry; 2005 Apr; 44(15):5703-12. PubMed ID: 15823028
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase.
    Archontis G; Simonson T; Karplus M
    J Mol Biol; 2001 Feb; 306(2):307-27. PubMed ID: 11237602
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens.
    Pasquato N; Berni R; Folli C; Folloni S; Cianci M; Pantano S; Helliwell JR; Zanotti G
    J Mol Biol; 2006 Feb; 356(3):684-94. PubMed ID: 16388823
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular dynamics simulation of protein adsorption at fluid interfaces: a comparison of all-atom and coarse-grained models.
    Euston SR
    Biomacromolecules; 2010 Oct; 11(10):2781-7. PubMed ID: 20839848
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Solution structure of a tobacco lipid transfer protein exhibiting new biophysical and biological features.
    Da Silva P; Landon C; Industri B; Marais A; Marion D; Ponchet M; Vovelle F
    Proteins; 2005 May; 59(2):356-67. PubMed ID: 15726627
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Empirical free energy calculations of human immunodeficiency virus type 1 protease crystallographic complexes. II. Knowledge-based ligand-protein interaction potentials applied to thermodynamic analysis of hydrophobic mutations.
    Verkhivker GM
    Pac Symp Biocomput; 1996; ():638-52. PubMed ID: 9390264
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Incorporating receptor flexibility in the molecular design of protein interfaces.
    Li L; Liang S; Pilcher MM; Meroueh SO
    Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Understanding the roles of Lys33 and Arg45 in the binding-site stability of LjLTP10, an LTP related to drought stress in Lotus japonicus.
    Valenzuela-Riffo F; Tapia G; Parra-Palma C; Morales-Quintana L
    J Mol Model; 2015 Oct; 21(10):270. PubMed ID: 26404479
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate predictions of nonpolar solvation free energies require explicit consideration of binding-site hydration.
    Genheden S; Mikulskis P; Hu L; Kongsted J; Söderhjelm P; Ryde U
    J Am Chem Soc; 2011 Aug; 133(33):13081-92. PubMed ID: 21728337
    [TBL] [Abstract][Full Text] [Related]  

  • 19. What determines the van der Waals coefficient beta in the LIE (linear interaction energy) method to estimate binding free energies using molecular dynamics simulations?
    Wang W; Wang J; Kollman PA
    Proteins; 1999 Feb; 34(3):395-402. PubMed ID: 10024025
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accessibility of tobacco lipid transfer protein cavity revealed by 15N NMR relaxation studies and molecular dynamics simulations.
    Da Silva P; Landon C; Beltoise R; Ponchet M; Vovelle F
    Proteins; 2006 Jul; 64(1):124-32. PubMed ID: 16555311
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.