55 related articles for article (PubMed ID: 22624182)
21. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G
Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081
[TBL] [Abstract][Full Text] [Related]
22. Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison.
Comin M; Verzotto D
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(4):628-37. PubMed ID: 26356333
[TBL] [Abstract][Full Text] [Related]
23. On a four-dimensional representation of DNA primary sequences.
Randić M; Balaban AT
J Chem Inf Comput Sci; 2003; 43(2):532-9. PubMed ID: 12653518
[TBL] [Abstract][Full Text] [Related]
24. Alignment-free sequence comparison (I): statistics and power.
Reinert G; Chew D; Sun F; Waterman MS
J Comput Biol; 2009 Dec; 16(12):1615-34. PubMed ID: 20001252
[TBL] [Abstract][Full Text] [Related]
25. Natural similarity measures between position frequency matrices with an application to clustering.
Pape UJ; Rahmann S; Vingron M
Bioinformatics; 2008 Feb; 24(3):350-7. PubMed ID: 18174183
[TBL] [Abstract][Full Text] [Related]
26. Fast, optimal alignment of three sequences using linear gap costs.
Powell DR; Allison L; Dix TI
J Theor Biol; 2000 Dec; 207(3):325-36. PubMed ID: 11082303
[TBL] [Abstract][Full Text] [Related]
27. Genome analysis: Assigning protein coding regions to three-dimensional structures.
Salamov AA; Suwa M; Orengo CA; Swindells MB
Protein Sci; 1999 Apr; 8(4):771-7. PubMed ID: 10211823
[TBL] [Abstract][Full Text] [Related]
28. On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Comin M; Antonello M
BMC Bioinformatics; 2016 Mar; 17():130. PubMed ID: 26987840
[TBL] [Abstract][Full Text] [Related]
29. Extraction of high quality k-words for alignment-free sequence comparison.
Gunasinghe U; Alahakoon D; Bedingfield S
J Theor Biol; 2014 Oct; 358():31-51. PubMed ID: 24846728
[TBL] [Abstract][Full Text] [Related]
30. New powerful statistics for alignment-free sequence comparison under a pattern transfer model.
Liu X; Wan L; Li J; Reinert G; Waterman MS; Sun F
J Theor Biol; 2011 Sep; 284(1):106-16. PubMed ID: 21723298
[TBL] [Abstract][Full Text] [Related]
31. Alignment free comparison: k word voting model and its applications.
Yang L; Zhang X; Zhu H
J Theor Biol; 2013 Oct; 335():276-82. PubMed ID: 23850481
[TBL] [Abstract][Full Text] [Related]
32. Absent words and the (dis)similarity analysis of DNA sequences: an experimental study.
Rahman MS; Alatabbi A; Athar T; Crochemore M; Rahman MS
BMC Res Notes; 2016 Mar; 9():186. PubMed ID: 27004958
[TBL] [Abstract][Full Text] [Related]
33. Multiple alignment-free sequence comparison.
Ren J; Song K; Sun F; Deng M; Reinert G
Bioinformatics; 2013 Nov; 29(21):2690-8. PubMed ID: 23990418
[TBL] [Abstract][Full Text] [Related]
34. The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances.
Röhling S; Linne A; Schellhorn J; Hosseini M; Dencker T; Morgenstern B
PLoS One; 2020; 15(2):e0228070. PubMed ID: 32040534
[TBL] [Abstract][Full Text] [Related]
35. Distributional regimes for the number of k-word matches between two random sequences.
Lippert RA; Huang H; Waterman MS
Proc Natl Acad Sci U S A; 2002 Oct; 99(22):13980-9. PubMed ID: 12374863
[TBL] [Abstract][Full Text] [Related]
36. Minimally selected p and other tests for a single abrupt changepoint in a binary sequence.
Halpern AL
Biometrics; 1999 Dec; 55(4):1044-50. PubMed ID: 11315046
[TBL] [Abstract][Full Text] [Related]
37. Distribution on contingency of alignment of two literal sequences under constrains.
Jäntschi L; Bolboacă SD
Acta Biotheor; 2015 Mar; 63(1):55-69. PubMed ID: 25524134
[TBL] [Abstract][Full Text] [Related]
38. Interpreting alignment-free sequence comparison: what makes a score a good score?
Swain MT; Vickers M
NAR Genom Bioinform; 2022 Sep; 4(3):lqac062. PubMed ID: 36071721
[TBL] [Abstract][Full Text] [Related]
39. Alignment-Free Sequence Analysis and Applications.
Ren J; Bai X; Lu YY; Tang K; Wang Y; Reinert G; Sun F
Annu Rev Biomed Data Sci; 2018 Jul; 1():93-114. PubMed ID: 31828235
[TBL] [Abstract][Full Text] [Related]
40. Alignment-free inference of hierarchical and reticulate phylogenomic relationships.
Bernard G; Chan CX; Chan YB; Chua XY; Cong Y; Hogan JM; Maetschke SR; Ragan MA
Brief Bioinform; 2019 Mar; 20(2):426-435. PubMed ID: 28673025
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
