These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 22639222)

  • 1. Simulating microbial systems: addressing model uncertainty/incompleteness via multiscale and entropy methods.
    Singharoy A; Joshi H; Cheluvaraja S; Miao Y; Brown D; Ortoleva P
    Methods Mol Biol; 2012; 881():433-67. PubMed ID: 22639222
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A new multiscale algorithm and its application to coarse-grained peptide models for self-assembly.
    Carmichael SP; Shell MS
    J Phys Chem B; 2012 Jul; 116(29):8383-93. PubMed ID: 22300263
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Modeling real dynamics in the coarse-grained representation of condensed phase systems.
    Izvekov S; Voth GA
    J Chem Phys; 2006 Oct; 125(15):151101. PubMed ID: 17059230
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiscale coarse graining of liquid-state systems.
    Izvekov S; Voth GA
    J Chem Phys; 2005 Oct; 123(13):134105. PubMed ID: 16223273
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Obtaining fully dynamic coarse-grained models from MD.
    Español P; Zúñiga I
    Phys Chem Chem Phys; 2011 Jun; 13(22):10538-45. PubMed ID: 21442096
    [TBL] [Abstract][Full Text] [Related]  

  • 7. First example of multi-scale reverse Monte Carlo modeling for small-angle scattering experimental data using reverse mapping from coarse-grained particles to atoms.
    Hagita K; McGreevy RL; Arai T; Inui M; Matsuda K; Tamura K
    J Phys Condens Matter; 2010 Oct; 22(40):404215. PubMed ID: 21386576
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Configurational entropies of lipids in pure and mixed bilayers from atomic-level and coarse-grained molecular dynamics simulations.
    Baron R; de Vries AH; Hünenberger PH; van Gunsteren WF
    J Phys Chem B; 2006 Aug; 110(31):15602-14. PubMed ID: 16884285
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inhomogeneous multiscale dynamics in harmonic lattices.
    Cubero D; Yaliraki SN
    J Chem Phys; 2005 Jan; 122(3):34108. PubMed ID: 15740193
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Coarse-grained modeling for macromolecular chemistry.
    Karimi-Varzaneh HA; Müller-Plathe F
    Top Curr Chem; 2012; 307():295-321. PubMed ID: 21360319
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Nonequilibrium multiscale computational model.
    Liu X; Li S
    J Chem Phys; 2007 Mar; 126(12):124105. PubMed ID: 17411106
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Equation-free multiscale computation: algorithms and applications.
    Kevrekidis IG; Samaey G
    Annu Rev Phys Chem; 2009; 60():321-44. PubMed ID: 19335220
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of atomic-level and coarse-grained models for liquid hydrocarbons from molecular dynamics configurational entropy estimates.
    Baron R; de Vries AH; Hünenberger PH; van Gunsteren WF
    J Phys Chem B; 2006 Apr; 110(16):8464-73. PubMed ID: 16623533
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multiscale coarse-graining of ionic liquids.
    Wang Y; Izvekov S; Yan T; Voth GA
    J Phys Chem B; 2006 Mar; 110(8):3564-75. PubMed ID: 16494412
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multiscale modeling of biomolecular systems: in serial and in parallel.
    Ayton GS; Noid WG; Voth GA
    Curr Opin Struct Biol; 2007 Apr; 17(2):192-8. PubMed ID: 17383173
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The multiscale coarse-graining method. VI. Implementation of three-body coarse-grained potentials.
    Larini L; Lu L; Voth GA
    J Chem Phys; 2010 Apr; 132(16):164107. PubMed ID: 20441258
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gibbs entropy and dynamics.
    Piftankin G; Treschev D
    Chaos; 2008 Jun; 18(2):023116. PubMed ID: 18601483
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Coarse-graining errors and numerical optimization using a relative entropy framework.
    Chaimovich A; Shell MS
    J Chem Phys; 2011 Mar; 134(9):094112. PubMed ID: 21384955
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multiscale analysis of short term heart beat interval, arterial blood pressure, and instantaneous lung volume time series.
    Angelini L; Maestri R; Marinazzo D; Nitti L; Pellicoro M; Pinna GD; Stramaglia S; Tupputi SA
    Artif Intell Med; 2007 Nov; 41(3):237-50. PubMed ID: 17950584
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Coarse-graining entropy, forces, and structures.
    Rudzinski JF; Noid WG
    J Chem Phys; 2011 Dec; 135(21):214101. PubMed ID: 22149773
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.