BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 22641710)

  • 1. QuickVina: accelerating AutoDock Vina using gradient-based heuristics for global optimization.
    Handoko SD; Ouyang X; Su CT; Kwoh CK; Ong YS
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(5):1266-72. PubMed ID: 22641710
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fast, accurate, and reliable molecular docking with QuickVina 2.
    Alhossary A; Handoko SD; Mu Y; Kwoh CK
    Bioinformatics; 2015 Jul; 31(13):2214-6. PubMed ID: 25717194
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Vina-GPU 2.0: Further Accelerating AutoDock Vina and Its Derivatives with Graphics Processing Units.
    Ding J; Tang S; Mei Z; Wang L; Huang Q; Hu H; Ling M; Wu J
    J Chem Inf Model; 2023 Apr; 63(7):1982-1998. PubMed ID: 36941232
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein-Ligand Blind Docking Using QuickVina-W With Inter-Process Spatio-Temporal Integration.
    Hassan NM; Alhossary AA; Mu Y; Kwoh CK
    Sci Rep; 2017 Nov; 7(1):15451. PubMed ID: 29133831
    [TBL] [Abstract][Full Text] [Related]  

  • 5. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.
    Trott O; Olson AJ
    J Comput Chem; 2010 Jan; 31(2):455-61. PubMed ID: 19499576
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The Performance of Several Docking Programs at Reproducing Protein-Macrolide-Like Crystal Structures.
    Castro-Alvarez A; Costa AM; Vilarrasa J
    Molecules; 2017 Jan; 22(1):. PubMed ID: 28106755
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking.
    Wong KM; Tai HK; Siu SWI
    Chem Biol Drug Des; 2021 Jan; 97(1):97-110. PubMed ID: 32679606
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of AutoDock and AutoDock Vina on the CASF-2013 Benchmark.
    Gaillard T
    J Chem Inf Model; 2018 Aug; 58(8):1697-1706. PubMed ID: 29989806
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accelerating AutoDock Vina with GPUs.
    Tang S; Chen R; Lin M; Lin Q; Zhu Y; Ding J; Hu H; Ling M; Wu J
    Molecules; 2022 May; 27(9):. PubMed ID: 35566391
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A New, Improved Hybrid Scoring Function for Molecular Docking and Scoring Based on AutoDock and AutoDock Vina.
    Tanchuk VY; Tanin VO; Vovk AI; Poda G
    Chem Biol Drug Des; 2016 Apr; 87(4):618-25. PubMed ID: 26643167
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Hybrid Cuckoo Search and Differential Evolution Approach to Protein⁻Ligand Docking.
    Lin H; Siu SWI
    Int J Mol Sci; 2018 Oct; 19(10):. PubMed ID: 30326669
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
    Ng MC; Fong S; Siu SW
    J Bioinform Comput Biol; 2015 Jun; 13(3):1541007. PubMed ID: 25800162
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comprehensive evaluation of ten docking programs on a diverse set of protein-ligand complexes: the prediction accuracy of sampling power and scoring power.
    Wang Z; Sun H; Yao X; Li D; Xu L; Li Y; Tian S; Hou T
    Phys Chem Chem Phys; 2016 May; 18(18):12964-75. PubMed ID: 27108770
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FWAVina: A novel optimization algorithm for protein-ligand docking based on the fireworks algorithm.
    Li J; Song Y; Li F; Zhang H; Liu W
    Comput Biol Chem; 2020 Oct; 88():107363. PubMed ID: 32861160
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A New Scoring Function for Molecular Docking Based on AutoDock and AutoDock Vina.
    Tanchuk VY; Tanin VO; Vovk AI; Poda G
    Curr Drug Discov Technol; 2015; 12(3):170-8. PubMed ID: 26302746
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Advances in Docking.
    Sulimov VB; Kutov DC; Sulimov AV
    Curr Med Chem; 2019; 26(42):7555-7580. PubMed ID: 30182836
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock Vina.
    Koebel MR; Schmadeke G; Posner RG; Sirimulla S
    J Cheminform; 2016; 8():27. PubMed ID: 27195023
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity.
    Nguyen NT; Nguyen TH; Pham TNH; Huy NT; Bay MV; Pham MQ; Nam PC; Vu VV; Ngo ST
    J Chem Inf Model; 2020 Jan; 60(1):204-211. PubMed ID: 31887035
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking.
    Li C; Sun J; Palade V
    BMC Bioinformatics; 2020 Jul; 21(1):286. PubMed ID: 32631216
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.