These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 22662120)

  • 1. Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model.
    Kück P; Mayer C; Wägele JW; Misof B
    PLoS One; 2012; 7(5):e36593. PubMed ID: 22662120
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.
    Mar JC; Harlow TJ; Ragan MA
    BMC Evol Biol; 2005 Jan; 5():8. PubMed ID: 15676079
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.
    Tateno Y; Takezaki N; Nei M
    Mol Biol Evol; 1994 Mar; 11(2):261-77. PubMed ID: 8170367
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Large sample approximations of probabilities of correct evolutionary tree estimation and biases of maximum likelihood estimation.
    Susko E
    Stat Appl Genet Mol Biol; 2011; 10():Article 10. PubMed ID: 21381435
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Success of maximum likelihood phylogeny inference in the four-taxon case.
    Gaut BS; Lewis PO
    Mol Biol Evol; 1995 Jan; 12(1):152-62. PubMed ID: 7877489
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.
    Ekman S; Blaalid R
    Syst Biol; 2011 Jul; 60(4):541-61. PubMed ID: 21436107
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Utility of characters evolving at diverse rates of evolution to resolve quartet trees with unequal branch lengths: analytical predictions of long-branch effects.
    Su Z; Townsend JP
    BMC Evol Biol; 2015 May; 15():86. PubMed ID: 25968460
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploring among-site rate variation models in a maximum likelihood framework using empirical data: effects of model assumptions on estimates of topology, branch lengths, and bootstrap support.
    Buckley TR; Simon C; Chambers GK
    Syst Biol; 2001 Feb; 50(1):67-86. PubMed ID: 12116595
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiple sequence alignment accuracy and phylogenetic inference.
    Ogden TH; Rosenberg MS
    Syst Biol; 2006 Apr; 55(2):314-28. PubMed ID: 16611602
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reliable estimation of tree branch lengths using deep neural networks.
    Suvorov A; Schrider DR
    PLoS Comput Biol; 2024 Aug; 20(8):e1012337. PubMed ID: 39102450
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenetic analysis and intraspecific variation: performance of parsimony, likelihood, and distance methods.
    Wiens JJ; Servedio MR
    Syst Biol; 1998 Jun; 47(2):228-53. PubMed ID: 12064228
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
    Yang Z; Goldman N; Friday A
    Mol Biol Evol; 1994 Mar; 11(2):316-24. PubMed ID: 8170371
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Maximum likelihood inference of small trees in the presence of long branches.
    Parks SL; Goldman N
    Syst Biol; 2014 Sep; 63(5):798-811. PubMed ID: 24996414
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Data-specific substitution models improve protein-based phylogenetics.
    Brazão JM; Foster PG; Cox CJ
    PeerJ; 2023; 11():e15716. PubMed ID: 37576497
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
    Molloy EK; Gatesy J; Springer MS
    Syst Biol; 2022 Apr; 71(3):721-740. PubMed ID: 34677617
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks.
    Schwartz RS; Mueller RL
    BMC Evol Biol; 2010 Jan; 10():5. PubMed ID: 20064267
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Quartet-mapping, a generalization of the likelihood-mapping procedure.
    Nieselt-Struwe K; von Haeseler A
    Mol Biol Evol; 2001 Jul; 18(7):1204-19. PubMed ID: 11420361
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Phylogenetic analysis using parsimony and likelihood methods.
    Yang Z
    J Mol Evol; 1996 Feb; 42(2):294-307. PubMed ID: 8919881
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Long-branch attraction bias and inconsistency in Bayesian phylogenetics.
    Kolaczkowski B; Thornton JW
    PLoS One; 2009 Dec; 4(12):e7891. PubMed ID: 20011052
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies.
    Leaché AD; Banbury BL; Felsenstein J; de Oca AN; Stamatakis A
    Syst Biol; 2015 Nov; 64(6):1032-47. PubMed ID: 26227865
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.