These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 22662161)

  • 21. On complexity of protein structure alignment problem under distance constraint.
    Poleksic A
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):511-6. PubMed ID: 22025757
    [TBL] [Abstract][Full Text] [Related]  

  • 22. CLAP: a web-server for automatic classification of proteins with special reference to multi-domain proteins.
    Gnanavel M; Mehrotra P; Rakshambikai R; Martin J; Srinivasan N; Bhaskara RM
    BMC Bioinformatics; 2014 Oct; 15(1):343. PubMed ID: 25282152
    [TBL] [Abstract][Full Text] [Related]  

  • 23. FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments.
    Saini HK; Fischer D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W499-502. PubMed ID: 17537819
    [TBL] [Abstract][Full Text] [Related]  

  • 24. MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments.
    Minami S; Sawada K; Chikenji G
    BMC Bioinformatics; 2013 Jan; 14():24. PubMed ID: 23331634
    [TBL] [Abstract][Full Text] [Related]  

  • 25. SAD--a normalized structural alignment database: improving sequence-structure alignments.
    Marsden B; Abagyan R
    Bioinformatics; 2004 Oct; 20(15):2333-44. PubMed ID: 15087320
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SANA: an algorithm for sequential and non-sequential protein structure alignment.
    Wang L; Wu LY; Wang Y; Zhang XS; Chen L
    Amino Acids; 2010 Jul; 39(2):417-25. PubMed ID: 20127263
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.
    Russell RB; Barton GJ
    Proteins; 1992 Oct; 14(2):309-23. PubMed ID: 1409577
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information.
    Pei J; Grishin NV
    Methods Mol Biol; 2014; 1079():263-71. PubMed ID: 24170408
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Detecting local structural similarity in proteins by maximizing number of equivalent residues.
    Standley DM; Toh H; Nakamura H
    Proteins; 2004 Nov; 57(2):381-91. PubMed ID: 15340925
    [TBL] [Abstract][Full Text] [Related]  

  • 30. CoeViz: a web-based tool for coevolution analysis of protein residues.
    Baker FN; Porollo A
    BMC Bioinformatics; 2016 Mar; 17():119. PubMed ID: 26956673
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH; Huang H; Kihara D
    Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
    [TBL] [Abstract][Full Text] [Related]  

  • 32. FAST: a novel protein structure alignment algorithm.
    Zhu J; Weng Z
    Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341
    [TBL] [Abstract][Full Text] [Related]  

  • 33. MODBASE, a database of annotated comparative protein structure models, and associated resources.
    Pieper U; Eswar N; Braberg H; Madhusudhan MS; Davis FP; Stuart AC; Mirkovic N; Rossi A; Marti-Renom MA; Fiser A; Webb B; Greenblatt D; Huang CC; Ferrin TE; Sali A
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D217-22. PubMed ID: 14681398
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Non-sequential protein structure alignment by conformational space annealing and local refinement.
    Joung I; Kim JY; Joo K; Lee J
    PLoS One; 2019; 14(1):e0210177. PubMed ID: 30699145
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Accelerated protein structure comparison using TM-score-GPU.
    Hung LH; Samudrala R
    Bioinformatics; 2012 Aug; 28(16):2191-2. PubMed ID: 22718788
    [TBL] [Abstract][Full Text] [Related]  

  • 36. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 37. GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.
    Standley DM; Toh H; Nakamura H
    BMC Bioinformatics; 2005 Sep; 6():221. PubMed ID: 16146579
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A note on difficult structure alignment problems.
    Sippl MJ; Wiederstein M
    Bioinformatics; 2008 Feb; 24(3):426-7. PubMed ID: 18174182
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography.
    Konagurthu AS; Reboul CF; Schmidberger JW; Irving JA; Lesk AM; Stuckey PJ; Whisstock JC; Buckle AM
    PLoS One; 2010 Apr; 5(4):e10048. PubMed ID: 20386610
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
    Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
    Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.