151 related articles for article (PubMed ID: 22665274)
1. SNP discovery in non-model organisms using 454 next generation sequencing.
Wheat CW
Methods Mol Biol; 2012; 888():33-53. PubMed ID: 22665274
[TBL] [Abstract][Full Text] [Related]
2. RAD paired-end sequencing for local de novo assembly and SNP discovery in non-model organisms.
Etter PD; Johnson E
Methods Mol Biol; 2012; 888():135-51. PubMed ID: 22665280
[TBL] [Abstract][Full Text] [Related]
3. SNP discovery by transcriptome pyrosequencing.
Barbazuk WB; Schnable PS
Methods Mol Biol; 2011; 729():225-46. PubMed ID: 21365494
[TBL] [Abstract][Full Text] [Related]
4. Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.
Hohenlohe PA; Catchen J; Cresko WA
Methods Mol Biol; 2012; 888():235-60. PubMed ID: 22665285
[TBL] [Abstract][Full Text] [Related]
5. Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.
Bräutigam A; Mullick T; Schliesky S; Weber AP
J Exp Bot; 2011 May; 62(9):3093-102. PubMed ID: 21398430
[TBL] [Abstract][Full Text] [Related]
6. Discovery of single-nucleotide polymorphisms (SNPs) in the uncharacterized genome of the ascomycete Ophiognomonia clavigignenti-juglandacearum from 454 sequence data.
Broders KD; Woeste KE; San Miguel PJ; Westerman RP; Boland GJ
Mol Ecol Resour; 2011 Jul; 11(4):693-702. PubMed ID: 21676199
[TBL] [Abstract][Full Text] [Related]
7. Discovery of a large set of SNP and SSR genetic markers by high-throughput sequencing of pepper (Capsicum annuum).
Nicolaï M; Pisani C; Bouchet JP; Vuylsteke M; Palloix A
Genet Mol Res; 2012 Aug; 11(3):2295-300. PubMed ID: 22911599
[TBL] [Abstract][Full Text] [Related]
8. Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis.
van Oeveren J; Janssen A
Methods Mol Biol; 2009; 578():73-91. PubMed ID: 19768587
[TBL] [Abstract][Full Text] [Related]
9. SNP discovery using Paired-End RAD-tag sequencing on pooled genomic DNA of Sisymbrium austriacum (Brassicaceae).
Vandepitte K; Honnay O; Mergeay J; Breyne P; Roldán-Ruiz I; De Meyer T
Mol Ecol Resour; 2013 Mar; 13(2):269-75. PubMed ID: 23231662
[TBL] [Abstract][Full Text] [Related]
10. Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
Seeb JE; Pascal CE; Grau ED; Seeb LW; Templin WD; Harkins T; Roberts SB
Mol Ecol Resour; 2011 Mar; 11(2):335-48. PubMed ID: 21429141
[TBL] [Abstract][Full Text] [Related]
11. Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.
Milano I; Babbucci M; Panitz F; Ogden R; Nielsen RO; Taylor MI; Helyar SJ; Carvalho GR; Espiñeira M; Atanassova M; Tinti F; Maes GE; Patarnello T; ; Bargelloni L
PLoS One; 2011; 6(11):e28008. PubMed ID: 22132191
[TBL] [Abstract][Full Text] [Related]
12. Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
Everett MV; Grau ED; Seeb JE
Mol Ecol Resour; 2011 Mar; 11 Suppl 1():93-108. PubMed ID: 21429166
[TBL] [Abstract][Full Text] [Related]
13. Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa.
Scaglione D; Lanteri S; Acquadro A; Lai Z; Knapp SJ; Rieseberg L; Portis E
Plant Biotechnol J; 2012 Oct; 10(8):956-69. PubMed ID: 22849342
[TBL] [Abstract][Full Text] [Related]
14. Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery.
Chan EY
Methods Mol Biol; 2009; 578():95-111. PubMed ID: 19768588
[TBL] [Abstract][Full Text] [Related]
15. A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida).
Olsen MT; Volny VH; Bérubé M; Dietz R; Lydersen C; Kovacs KM; Dodd RS; Palsbøll PJ
Mol Ecol Resour; 2011 Mar; 11 Suppl 1():9-19. PubMed ID: 21429159
[TBL] [Abstract][Full Text] [Related]
16. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.
Cahais V; Gayral P; Tsagkogeorga G; Melo-Ferreira J; Ballenghien M; Weinert L; Chiari Y; Belkhir K; Ranwez V; Galtier N
Mol Ecol Resour; 2012 Sep; 12(5):834-45. PubMed ID: 22540679
[TBL] [Abstract][Full Text] [Related]
17. Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing.
Lai Z; Zou Y; Kane NC; Choi JH; Wang X; Rieseberg LH
Methods Mol Biol; 2012; 888():119-33. PubMed ID: 22665279
[TBL] [Abstract][Full Text] [Related]
18. Transcriptome sequencing goals, assembly, and assessment.
Wheat CW; Vogel H
Methods Mol Biol; 2011; 772():129-44. PubMed ID: 22065435
[TBL] [Abstract][Full Text] [Related]
19. Single nucleotide polymorphism discovery from wheat next-generation sequence data.
Lai K; Duran C; Berkman PJ; Lorenc MT; Stiller J; Manoli S; Hayden MJ; Forrest KL; Fleury D; Baumann U; Zander M; Mason AS; Batley J; Edwards D
Plant Biotechnol J; 2012 Aug; 10(6):743-9. PubMed ID: 22748104
[TBL] [Abstract][Full Text] [Related]
20. A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel.
Pujolar JM; Jacobsen MW; Frydenberg J; Als TD; Larsen PF; Maes GE; Zane L; Jian JB; Cheng L; Hansen MM
Mol Ecol Resour; 2013 Jul; 13(4):706-14. PubMed ID: 23656721
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]