182 related articles for article (PubMed ID: 22685393)
21. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
22. Improving ancient DNA read mapping against modern reference genomes.
Schubert M; Ginolhac A; Lindgreen S; Thompson JF; Al-Rasheid KA; Willerslev E; Krogh A; Orlando L
BMC Genomics; 2012 May; 13():178. PubMed ID: 22574660
[TBL] [Abstract][Full Text] [Related]
23. Metagenomics using next-generation sequencing.
Bragg L; Tyson GW
Methods Mol Biol; 2014; 1096():183-201. PubMed ID: 24515370
[TBL] [Abstract][Full Text] [Related]
24. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
25. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
26. Clustering of circular consensus sequences: accurate error correction and assembly of single molecule real-time reads from multiplexed amplicon libraries.
Francis F; Dumas MD; Davis SB; Wisser RJ
BMC Bioinformatics; 2018 Aug; 19(1):302. PubMed ID: 30126356
[TBL] [Abstract][Full Text] [Related]
27. Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments.
Clarke EL; Taylor LJ; Zhao C; Connell A; Lee JJ; Fett B; Bushman FD; Bittinger K
Microbiome; 2019 Mar; 7(1):46. PubMed ID: 30902113
[TBL] [Abstract][Full Text] [Related]
28. A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
Jiang H; An L; Lin SM; Feng G; Qiu Y
PLoS One; 2012; 7(10):e46450. PubMed ID: 23049702
[TBL] [Abstract][Full Text] [Related]
29. Correction of sequencing errors in a mixed set of reads.
Salmela L
Bioinformatics; 2010 May; 26(10):1284-90. PubMed ID: 20378555
[TBL] [Abstract][Full Text] [Related]
30. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS; Shaw LP; Swann J; De Maio N; AbuOun M; Niehus R; Hubbard ATM; Bowes MJ; Bailey MJ; Peto TEA; Hoosdally SJ; Walker AS; Sebra RP; Crook DW; Anjum MF; Read DS; Stoesser N;
Environ Microbiome; 2019 Oct; 14(1):7. PubMed ID: 33902704
[TBL] [Abstract][Full Text] [Related]
31. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
Keegan KP; Glass EM; Meyer F
Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
[TBL] [Abstract][Full Text] [Related]
32. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Girotto S; Pizzi C; Comin M
Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
[TBL] [Abstract][Full Text] [Related]
33. NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors.
Gaspar JM
BMC Bioinformatics; 2018 Dec; 19(1):536. PubMed ID: 30572828
[TBL] [Abstract][Full Text] [Related]
34. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
[TBL] [Abstract][Full Text] [Related]
35. A comprehensive evaluation of long read error correction methods.
Zhang H; Jain C; Aluru S
BMC Genomics; 2020 Dec; 21(Suppl 6):889. PubMed ID: 33349243
[TBL] [Abstract][Full Text] [Related]
36. Assessment of metagenomic assembly using simulated next generation sequencing data.
Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
[TBL] [Abstract][Full Text] [Related]
37. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
[TBL] [Abstract][Full Text] [Related]
38. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
Dilthey AT; Jain C; Koren S; Phillippy AM
Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
[TBL] [Abstract][Full Text] [Related]
39. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
[TBL] [Abstract][Full Text] [Related]
40. Virus detection in high-throughput sequencing data without a reference genome of the host.
Kruppa J; Jo WK; van der Vries E; Ludlow M; Osterhaus A; Baumgaertner W; Jung K
Infect Genet Evol; 2018 Dec; 66():180-187. PubMed ID: 30292006
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
