These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
121 related articles for article (PubMed ID: 22731116)
1. Insights into the thermal stabilization and conformational transitions of DNA by hyperthermophile protein Sso7d: molecular dynamics simulations and MM-PBSA analysis. Chen L; Zheng QC; Yu LY; Chu WT; Zhang JL; Xue Q; Zhang HX; Sun CC J Biomol Struct Dyn; 2012; 30(6):716-27. PubMed ID: 22731116 [TBL] [Abstract][Full Text] [Related]
2. Influence of hyperthermophilic protein Cren7 on the stability and conformation of DNA: insights from molecular dynamics simulation and free energy analysis. Chen L; Zhang JL; Yu LY; Zheng QC; Chu WT; Xue Q; Zhang HX; Sun CC J Phys Chem B; 2012 Oct; 116(41):12415-25. PubMed ID: 23013198 [TBL] [Abstract][Full Text] [Related]
3. Molecular simulations on the thermal stabilization of DNA by hyperthermophilic chromatin protein Sac7d, and associated conformational transitions. Priyakumar UD; Harika G; Suresh G J Phys Chem B; 2010 Dec; 114(49):16548-57. PubMed ID: 21086967 [TBL] [Abstract][Full Text] [Related]
4. Role of hydrophobic core on the thermal stability of proteins - molecular dynamics simulations on a single point mutant of Sso7d abstract. Priyakumar UD J Biomol Struct Dyn; 2012; 29(5):961-71. PubMed ID: 22292954 [TBL] [Abstract][Full Text] [Related]
5. Structural and dynamic effects of alpha-helix deletion in Sso7d: implications for protein thermal stability. Merlino A; Graziano G; Mazzarella L Proteins; 2004 Dec; 57(4):692-701. PubMed ID: 15317021 [TBL] [Abstract][Full Text] [Related]
6. Structural and energetic determinants of thermal stability and hierarchical unfolding pathways of hyperthermophilic proteins, Sac7d and Sso7d. Priyakumar UD; Ramakrishna S; Nagarjuna KR; Reddy SK J Phys Chem B; 2010 Feb; 114(4):1707-18. PubMed ID: 20055363 [TBL] [Abstract][Full Text] [Related]
7. Thermal unfolding of the DNA-binding protein Sso7d from the hyperthermophile Sulfolobus solfataricus. Knapp S; Karshikoff A; Berndt KD; Christova P; Atanasov B; Ladenstein R J Mol Biol; 1996 Dec; 264(5):1132-44. PubMed ID: 9000635 [TBL] [Abstract][Full Text] [Related]
8. The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Gao YG; Su SY; Robinson H; Padmanabhan S; Lim L; McCrary BS; Edmondson SP; Shriver JW; Wang AH Nat Struct Biol; 1998 Sep; 5(9):782-6. PubMed ID: 9731772 [TBL] [Abstract][Full Text] [Related]
9. Thermodynamics of core hydrophobicity and packing in the hyperthermophile proteins Sac7d and Sso7d. Clark AT; McCrary BS; Edmondson SP; Shriver JW Biochemistry; 2004 Mar; 43(10):2840-53. PubMed ID: 15005619 [TBL] [Abstract][Full Text] [Related]
10. Thermal stability and unfolding pathways of Sso7d and its mutant F31A: insight from molecular dynamics simulation. Xu X; Su J; Chen W; Wang C J Biomol Struct Dyn; 2011 Apr; 28(5):717-27. PubMed ID: 21294584 [TBL] [Abstract][Full Text] [Related]
11. Partial B-to-A DNA transition upon minor groove binding of protein Sac7d monitored by Raman spectroscopy. Dostál L; Chen CY; Wang AH; Welfle H Biochemistry; 2004 Aug; 43(30):9600-9. PubMed ID: 15274614 [TBL] [Abstract][Full Text] [Related]
12. Thermodynamics of DNA binding and distortion by the hyperthermophile chromatin protein Sac7d. Peters WB; Edmondson SP; Shriver JW J Mol Biol; 2004 Oct; 343(2):339-60. PubMed ID: 15451665 [TBL] [Abstract][Full Text] [Related]
13. Architecture of nonspecific protein-DNA interactions in the Sso7d-DNA complex. Agback P; Baumann H; Knapp S; Ladenstein R; Härd T Nat Struct Biol; 1998 Jul; 5(7):579-84. PubMed ID: 9665172 [TBL] [Abstract][Full Text] [Related]
14. Analyzing the robustness of the MM/PBSA free energy calculation method: application to DNA conformational transitions. Brice AR; Dominy BN J Comput Chem; 2011 May; 32(7):1431-40. PubMed ID: 21284003 [TBL] [Abstract][Full Text] [Related]
15. Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus. Lundbäck T; Hansson H; Knapp S; Ladenstein R; Härd T J Mol Biol; 1998 Mar; 276(4):775-86. PubMed ID: 9500918 [TBL] [Abstract][Full Text] [Related]
16. Highly stable binding proteins derived from the hyperthermophilic Sso7d scaffold. Gera N; Hussain M; Wright RC; Rao BM J Mol Biol; 2011 Jun; 409(4):601-16. PubMed ID: 21515282 [TBL] [Abstract][Full Text] [Related]
17. DNA-binding surface of the Sso7d protein from Sulfolobus solfataricus. Baumann H; Knapp S; Karshikoff A; Ladenstein R; Härd T J Mol Biol; 1995 Apr; 247(5):840-6. PubMed ID: 7723036 [TBL] [Abstract][Full Text] [Related]
18. Structural characterization of the functional regions in the archaeal protein Sso7d. Renzone G; Vitale RM; Scaloni A; Rossi M; Amodeo P; Guagliardi A Proteins; 2007 Apr; 67(1):189-97. PubMed ID: 17243156 [TBL] [Abstract][Full Text] [Related]
19. Effect of mutation of the Sac7d intercalating residues on the temperature dependence of DNA distortion and binding thermodynamics. Peters WB; Edmondson SP; Shriver JW Biochemistry; 2005 Mar; 44(12):4794-804. PubMed ID: 15779906 [TBL] [Abstract][Full Text] [Related]
20. Frontiers in molecular dynamics simulations of DNA. Pérez A; Luque FJ; Orozco M Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]