These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

266 related articles for article (PubMed ID: 22735969)

  • 1. Coarse-grained simulations of protein aggregation.
    Cellmer T; Fawzi NL
    Methods Mol Biol; 2012; 899():453-70. PubMed ID: 22735969
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular dynamics simulations of polyglutamine aggregation using solvent-free multiscale coarse-grained models.
    Wang Y; Voth GA
    J Phys Chem B; 2010 Jul; 114(26):8735-43. PubMed ID: 20550147
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Coarse-grained models of protein folding: toy models or predictive tools?
    Clementi C
    Curr Opin Struct Biol; 2008 Feb; 18(1):10-5. PubMed ID: 18160277
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coarse-grained models for proteins.
    Tozzini V
    Curr Opin Struct Biol; 2005 Apr; 15(2):144-50. PubMed ID: 15837171
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Oscillatory molecular driving force for protein folding at high concentration: a molecular simulation.
    Lu D; Liu Z
    J Phys Chem B; 2008 Mar; 112(9):2686-93. PubMed ID: 18266355
    [TBL] [Abstract][Full Text] [Related]  

  • 7. From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A.
    Kmiecik S; Gront D; Kouza M; Kolinski A
    J Phys Chem B; 2012 Jun; 116(23):7026-32. PubMed ID: 22486297
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent.
    Chebaro Y; Dong X; Laghaei R; Derreumaux P; Mousseau N
    J Phys Chem B; 2009 Jan; 113(1):267-74. PubMed ID: 19067549
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Folding and stability of helical bundle proteins from coarse-grained models.
    Kapoor A; Travesset A
    Proteins; 2013 Jul; 81(7):1200-11. PubMed ID: 23426892
    [TBL] [Abstract][Full Text] [Related]  

  • 10. iFold: a platform for interactive folding simulations of proteins.
    Sharma S; Ding F; Nie H; Watson D; Unnithan A; Lopp J; Pozefsky D; Dokholyan NV
    Bioinformatics; 2006 Nov; 22(21):2693-4. PubMed ID: 16940324
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transition network based on equilibrium sampling: a new method for extracting kinetic information from Monte Carlo simulations of protein folding.
    Klenin KV; Wenzel W
    J Chem Phys; 2011 Dec; 135(23):235105. PubMed ID: 22191905
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model.
    Jamroz M; Kolinski A; Kmiecik S
    Methods Mol Biol; 2014; 1137():235-50. PubMed ID: 24573485
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Coarse-grained models for protein folding and aggregation.
    Derreumaux P
    Methods Mol Biol; 2013; 924():585-600. PubMed ID: 23034764
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Coarse-grained protein molecular dynamics simulations.
    Derreumaux P; Mousseau N
    J Chem Phys; 2007 Jan; 126(2):025101. PubMed ID: 17228975
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The competition between protein folding and aggregation: off-lattice minimalist model studies.
    Cellmer T; Bratko D; Prausnitz JM; Blanch H
    Biotechnol Bioeng; 2005 Jan; 89(1):78-87. PubMed ID: 15540197
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Coarse-grained lattice model simulations of sequence-structure fitness of a ribosome-inactivating protein.
    Olson MA; Yeh IC; Lee MS
    Biopolymers; 2008 Feb; 89(2):153-9. PubMed ID: 17985366
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations.
    Kannan S; Zacharias M
    Proteins; 2009 Aug; 76(2):448-60. PubMed ID: 19173315
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Recent advances in the development and application of implicit solvent models in biomolecule simulations.
    Feig M; Brooks CL
    Curr Opin Struct Biol; 2004 Apr; 14(2):217-24. PubMed ID: 15093837
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
    Betancourt MR
    J Phys Chem B; 2009 Nov; 113(44):14824-30. PubMed ID: 19817469
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Application of biasing-potential replica-exchange simulations for loop modeling and refinement of proteins in explicit solvent.
    Kannan S; Zacharias M
    Proteins; 2010 Oct; 78(13):2809-19. PubMed ID: 20635348
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.