These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 22745671)

  • 1. The PhyloPythiaS web server for taxonomic assignment of metagenome sequences.
    Patil KR; Roune L; McHardy AC
    PLoS One; 2012; 7(6):e38581. PubMed ID: 22745671
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rapid identification of high-confidence taxonomic assignments for metagenomic data.
    MacDonald NJ; Parks DH; Beiko RG
    Nucleic Acids Res; 2012 Aug; 40(14):e111. PubMed ID: 22532608
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.
    Gregor I; Dröge J; Schirmer M; Quince C; McHardy AC
    PeerJ; 2016; 4():e1603. PubMed ID: 26870609
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization.
    Langenkämper D; Goesmann A; Nattkemper TW
    BMC Bioinformatics; 2014 Dec; 15(1):384. PubMed ID: 25495116
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing.
    Ross EM; Moate PJ; Bath CR; Davidson SE; Sawbridge TI; Guthridge KM; Cocks BG; Hayes BJ
    BMC Genet; 2012 Jul; 13():53. PubMed ID: 22747657
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Metagenomic analysis exploring taxonomic diversity of rumen microbial communities in Vechur and crossbred cattle of Kerala state, India.
    Sadan T; Aravindakshan TV; Radhika G; Anand LF; Ally K
    J Appl Genet; 2020 May; 61(2):287-297. PubMed ID: 32006353
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality.
    Jiang Y; Xiong X; Danska J; Parkinson J
    Microbiome; 2016 Jan; 4():2. PubMed ID: 26757703
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods.
    Dröge J; Gregor I; McHardy AC
    Bioinformatics; 2015 Mar; 31(6):817-24. PubMed ID: 25388150
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
    Liu Z; DeSantis TZ; Andersen GL; Knight R
    Nucleic Acids Res; 2008 Oct; 36(18):e120. PubMed ID: 18723574
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Re-purposing software for functional characterization of the microbiome.
    Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
    Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms.
    Liu J; Wang H; Yang H; Zhang Y; Wang J; Zhao F; Qi J
    Nucleic Acids Res; 2013 Jan; 41(1):e3. PubMed ID: 22941634
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Census-based rapid and accurate metagenome taxonomic profiling.
    Shamsaddini A; Pan Y; Johnson WE; Krampis K; Shcheglovitova M; Simonyan V; Zanne A; Mazumder R
    BMC Genomics; 2014 Oct; 15(1):918. PubMed ID: 25336203
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metagenomic analysis of Surti buffalo (Bubalus bubalis) rumen: a preliminary study.
    Singh KM; Ahir VB; Tripathi AK; Ramani UV; Sajnani M; Koringa PG; Jakhesara S; Pandya PR; Rank DN; Murty DS; Kothari RK; Joshi CG
    Mol Biol Rep; 2012 Apr; 39(4):4841-8. PubMed ID: 21947953
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The rumen microbial metagenome associated with high methane production in cattle.
    Wallace RJ; Rooke JA; McKain N; Duthie CA; Hyslop JJ; Ross DW; Waterhouse A; Watson M; Roehe R
    BMC Genomics; 2015 Oct; 16():839. PubMed ID: 26494241
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular analysis of the bacterial microbiome in the forestomach fluid from the dromedary camel (Camelus dromedarius).
    Bhatt VD; Dande SS; Patil NV; Joshi CG
    Mol Biol Rep; 2013 Apr; 40(4):3363-71. PubMed ID: 23277394
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.
    Kanehisa M; Sato Y; Morishima K
    J Mol Biol; 2016 Feb; 428(4):726-731. PubMed ID: 26585406
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Classifying short genomic fragments from novel lineages using composition and homology.
    Parks DH; MacDonald NJ; Beiko RG
    BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Taxonomic and functional assignment of cloned sequences from high Andean forest soil metagenome.
    Montaña JS; Jiménez DJ; Hernández M; Angel T; Baena S
    Antonie Van Leeuwenhoek; 2012 Feb; 101(2):205-15. PubMed ID: 21792685
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.