BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

328 related articles for article (PubMed ID: 22761590)

  • 1. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.
    Shibata Y; Sheffield NC; Fedrigo O; Babbitt CC; Wortham M; Tewari AK; London D; Song L; Lee BK; Iyer VR; Parker SC; Margulies EH; Wray GA; Furey TS; Crawford GE
    PLoS Genet; 2012 Jun; 8(6):e1002789. PubMed ID: 22761590
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.
    Edsall LE; Berrio A; Majoros WH; Swain-Lenz D; Morrow S; Shibata Y; Safi A; Wray GA; Crawford GE; Allen AS
    Genome Biol Evol; 2019 Oct; 11(10):3035-3053. PubMed ID: 31599933
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evolution of DNAase I Hypersensitive Sites in MHC Regulatory Regions of Primates.
    Jin Y; Gittelman RM; Lu Y; Liu X; Li MD; Ling F; Akey JM
    Genetics; 2018 Jun; 209(2):579-589. PubMed ID: 29669733
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Selective constraints in experimentally defined primate regulatory regions.
    Gaffney DJ; Blekhman R; Majewski J
    PLoS Genet; 2008 Aug; 4(8):e1000157. PubMed ID: 18704158
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The majority of primate-specific regulatory sequences are derived from transposable elements.
    Jacques PÉ; Jeyakani J; Bourque G
    PLoS Genet; 2013 May; 9(5):e1003504. PubMed ID: 23675311
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The accessible chromatin landscape of the human genome.
    Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
    Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.
    Sheffield NC; Thurman RE; Song L; Safi A; Stamatoyannopoulos JA; Lenhard B; Crawford GE; Furey TS
    Genome Res; 2013 May; 23(5):777-88. PubMed ID: 23482648
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions.
    Benner C; Konovalov S; Mackintosh C; Hutt KR; Stunnenberg R; Garcia-Bassets I
    PLoS Genet; 2013 Nov; 9(11):e1003906. PubMed ID: 24244184
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-Wide Identification of Regulatory Sequences Undergoing Accelerated Evolution in the Human Genome.
    Dong X; Wang X; Zhang F; Tian W
    Mol Biol Evol; 2016 Oct; 33(10):2565-75. PubMed ID: 27401230
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of constrained sequence elements across 239 primate genomes.
    Kuderna LFK; Ulirsch JC; Rashid S; Ameen M; Sundaram L; Hickey G; Cox AJ; Gao H; Kumar A; Aguet F; Christmas MJ; Clawson H; Haeussler M; Janiak MC; Kuhlwilm M; Orkin JD; Bataillon T; Manu S; Valenzuela A; Bergman J; Rouselle M; Silva FE; Agueda L; Blanc J; Gut M; de Vries D; Goodhead I; Harris RA; Raveendran M; Jensen A; Chuma IS; Horvath JE; Hvilsom C; Juan D; Frandsen P; Schraiber JG; de Melo FR; Bertuol F; Byrne H; Sampaio I; Farias I; Valsecchi J; Messias M; da Silva MNF; Trivedi M; Rossi R; Hrbek T; Andriaholinirina N; Rabarivola CJ; Zaramody A; Jolly CJ; Phillips-Conroy J; Wilkerson G; Abee C; Simmons JH; Fernandez-Duque E; Kanthaswamy S; Shiferaw F; Wu D; Zhou L; Shao Y; Zhang G; Keyyu JD; Knauf S; Le MD; Lizano E; Merker S; Navarro A; Nadler T; Khor CC; Lee J; Tan P; Lim WK; Kitchener AC; Zinner D; Gut I; Melin AD; Guschanski K; Schierup MH; Beck RMD; Karakikes I; Wang KC; Umapathy G; Roos C; Boubli JP; Siepel A; Kundaje A; Paten B; Lindblad-Toh K; Rogers J; Marques Bonet T; Farh KK
    Nature; 2024 Jan; 625(7996):735-742. PubMed ID: 38030727
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Causes and consequences of chromatin variation between inbred mice.
    Hosseini M; Goodstadt L; Hughes JR; Kowalczyk MS; de Gobbi M; Otto GW; Copley RR; Mott R; Higgs DR; Flint J
    PLoS Genet; 2013 Jun; 9(6):e1003570. PubMed ID: 23785304
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Catalogue of 59,732 Human-Specific Regulatory Sequences Reveals Unique-to-Human Regulatory Patterns Associated with Virus-Interacting Proteins, Pluripotency, and Brain Development.
    Glinsky GV
    DNA Cell Biol; 2020 Jan; 39(1):126-143. PubMed ID: 31730374
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs.
    Glinsky GV
    Genome Biol Evol; 2015 May; 7(6):1432-54. PubMed ID: 25956794
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.
    Vierstra J; Rynes E; Sandstrom R; Zhang M; Canfield T; Hansen RS; Stehling-Sun S; Sabo PJ; Byron R; Humbert R; Thurman RE; Johnson AK; Vong S; Lee K; Bates D; Neri F; Diegel M; Giste E; Haugen E; Dunn D; Wilken MS; Josefowicz S; Samstein R; Chang KH; Eichler EE; De Bruijn M; Reh TA; Skoultchi A; Rudensky A; Orkin SH; Papayannopoulou T; Treuting PM; Selleri L; Kaul R; Groudine M; Bender MA; Stamatoyannopoulos JA
    Science; 2014 Nov; 346(6212):1007-12. PubMed ID: 25411453
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Gammaretroviral vector integration occurs overwhelmingly within and near DNase hypersensitive sites.
    Liu M; Li CL; Stamatoyannopoulos G; Dorschner MO; Humbert R; Stamatoyannopoulos JA; Emery DW
    Hum Gene Ther; 2012 Feb; 23(2):231-7. PubMed ID: 21981728
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.
    Zhang W; Zhang T; Wu Y; Jiang J
    Plant Cell; 2012 Jul; 24(7):2719-31. PubMed ID: 22773751
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.
    Dermitzakis ET; Clark AG
    Mol Biol Evol; 2002 Jul; 19(7):1114-21. PubMed ID: 12082130
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A genome-wide screen for genetic variants that modify the recruitment of REST to its target genes.
    Johnson R; Richter N; Bogu GK; Bhinge A; Teng SW; Choo SH; Andrieux LO; de Benedictis C; Jauch R; Stanton LW
    PLoS Genet; 2012; 8(4):e1002624. PubMed ID: 22496669
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Local sequence features that influence AP-1
    Chaudhari HG; Cohen BA
    Genome Res; 2018 Feb; 28(2):171-181. PubMed ID: 29305491
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mechanistically Distinct Pathways of Divergent Regulatory DNA Creation Contribute to Evolution of Human-Specific Genomic Regulatory Networks Driving Phenotypic Divergence of Homo sapiens.
    Glinsky GV
    Genome Biol Evol; 2016 Sep; 8(9):2774-88. PubMed ID: 27503290
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.