159 related articles for article (PubMed ID: 22768038)
1. Bivalent-like chromatin markers are predictive for transcription start site distribution in human.
Zhang Z; Ma X; Zhang MQ
PLoS One; 2012; 7(6):e38112. PubMed ID: 22768038
[TBL] [Abstract][Full Text] [Related]
2. Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.
Nozaki T; Yachie N; Ogawa R; Kratz A; Saito R; Tomita M
BMC Genomics; 2011 Aug; 12():416. PubMed ID: 21846408
[TBL] [Abstract][Full Text] [Related]
3. Human genes with CpG island promoters have a distinct transcription-associated chromatin organization.
Vavouri T; Lehner B
Genome Biol; 2012 Nov; 13(11):R110. PubMed ID: 23186133
[TBL] [Abstract][Full Text] [Related]
4. Quantitative analysis reveals increased histone modifications and a broad nucleosome-free region bound by histone acetylases in highly expressed genes in human CD4+ T cells.
Liu H; Luo K; Wen H; Ma X; Xie J; Sun X
Genomics; 2013 Feb; 101(2):113-9. PubMed ID: 23195408
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide positioning of bivalent mononucleosomes.
Sen S; Block KF; Pasini A; Baylin SB; Easwaran H
BMC Med Genomics; 2016 Sep; 9(1):60. PubMed ID: 27634286
[TBL] [Abstract][Full Text] [Related]
6. Inter-nucleosomal communication between histone modifications for nucleosome phasing.
Chen W; Liu Y; Zhu S; Chen G; Han JJ
PLoS Comput Biol; 2018 Sep; 14(9):e1006416. PubMed ID: 30188887
[TBL] [Abstract][Full Text] [Related]
7. Prediction of histone post-translational modification patterns based on nascent transcription data.
Wang Z; Chivu AG; Choate LA; Rice EJ; Miller DC; Chu T; Chou SP; Kingsley NB; Petersen JL; Finno CJ; Bellone RR; Antczak DF; Lis JT; Danko CG
Nat Genet; 2022 Mar; 54(3):295-305. PubMed ID: 35273399
[TBL] [Abstract][Full Text] [Related]
8. Divergent transcription and epigenetic directionality of human promoters.
Lacadie SA; Ibrahim MM; Gokhale SA; Ohler U
FEBS J; 2016 Dec; 283(23):4214-4222. PubMed ID: 27115538
[TBL] [Abstract][Full Text] [Related]
9. Classification of Promoters Based on the Combination of Core Promoter Elements Exhibits Different Histone Modification Patterns.
Natsume-Kitatani Y; Mamitsuka H
PLoS One; 2016; 11(3):e0151917. PubMed ID: 27003446
[TBL] [Abstract][Full Text] [Related]
10. Modeling the dynamics of bivalent histone modifications.
Ku WL; Girvan M; Yuan GC; Sorrentino F; Ott E
PLoS One; 2013; 8(11):e77944. PubMed ID: 24223747
[TBL] [Abstract][Full Text] [Related]
11. Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell.
Nishida H; Suzuki T; Kondo S; Miura H; Fujimura Y; Hayashizaki Y
Chromosome Res; 2006; 14(2):203-11. PubMed ID: 16544193
[TBL] [Abstract][Full Text] [Related]
12. BAF250a Protein Regulates Nucleosome Occupancy and Histone Modifications in Priming Embryonic Stem Cell Differentiation.
Lei I; West J; Yan Z; Gao X; Fang P; Dennis JH; Gnatovskiy L; Wang W; Kingston RE; Wang Z
J Biol Chem; 2015 Jul; 290(31):19343-52. PubMed ID: 26070559
[TBL] [Abstract][Full Text] [Related]
13. Two independent transcription initiation codes overlap on vertebrate core promoters.
Haberle V; Li N; Hadzhiev Y; Plessy C; Previti C; Nepal C; Gehrig J; Dong X; Akalin A; Suzuki AM; van IJcken WFJ; Armant O; Ferg M; Strähle U; Carninci P; Müller F; Lenhard B
Nature; 2014 Mar; 507(7492):381-385. PubMed ID: 24531765
[TBL] [Abstract][Full Text] [Related]
14. Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoter.
Petter M; Lee CC; Byrne TJ; Boysen KE; Volz J; Ralph SA; Cowman AF; Brown GV; Duffy MF
PLoS Pathog; 2011 Feb; 7(2):e1001292. PubMed ID: 21379342
[TBL] [Abstract][Full Text] [Related]
15. Histone modification levels are predictive for gene expression.
Karlić R; Chung HR; Lasserre J; Vlahovicek K; Vingron M
Proc Natl Acad Sci U S A; 2010 Feb; 107(7):2926-31. PubMed ID: 20133639
[TBL] [Abstract][Full Text] [Related]
16. Nucleosome Organization in Human Embryonic Stem Cells.
Yazdi PG; Pedersen BA; Taylor JF; Khattab OS; Chen YH; Chen Y; Jacobsen SE; Wang PH
PLoS One; 2015; 10(8):e0136314. PubMed ID: 26305225
[TBL] [Abstract][Full Text] [Related]
17. Chromatin signature discovery via histone modification profile alignments.
Wang J; Lunyak VV; Jordan IK
Nucleic Acids Res; 2012 Nov; 40(21):10642-56. PubMed ID: 22989711
[TBL] [Abstract][Full Text] [Related]
18. Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.
Lavender CA; Cannady KR; Hoffman JA; Trotter KW; Gilchrist DA; Bennett BD; Burkholder AB; Burd CJ; Fargo DC; Archer TK
PLoS Genet; 2016 Aug; 12(8):e1006224. PubMed ID: 27487356
[TBL] [Abstract][Full Text] [Related]
19. Discriminating nucleosomes containing histone H2A.Z or H2A based on genetic and epigenetic information.
Gervais AL; Gaudreau L
BMC Mol Biol; 2009 Mar; 10():18. PubMed ID: 19261190
[TBL] [Abstract][Full Text] [Related]
20. Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.
Chen Y; Jørgensen M; Kolde R; Zhao X; Parker B; Valen E; Wen J; Sandelin A
BMC Genomics; 2011 Nov; 12():544. PubMed ID: 22047616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]