348 related articles for article (PubMed ID: 22772729)
1. False discovery rate estimation for cross-linked peptides identified by mass spectrometry.
Walzthoeni T; Claassen M; Leitner A; Herzog F; Bohn S; Förster F; Beck M; Aebersold R
Nat Methods; 2012 Sep; 9(9):901-3. PubMed ID: 22772729
[TBL] [Abstract][Full Text] [Related]
2. Identification of cross-linked peptides from complex samples.
Yang B; Wu YJ; Zhu M; Fan SB; Lin J; Zhang K; Li S; Chi H; Li YX; Chen HF; Luo SK; Ding YH; Wang LH; Hao Z; Xiu LY; Chen S; Ye K; He SM; Dong MQ
Nat Methods; 2012 Sep; 9(9):904-6. PubMed ID: 22772728
[TBL] [Abstract][Full Text] [Related]
3. xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry.
Walzthoeni T; Joachimiak LA; Rosenberger G; Röst HL; Malmström L; Leitner A; Frydman J; Aebersold R
Nat Methods; 2015 Dec; 12(12):1185-90. PubMed ID: 26501516
[TBL] [Abstract][Full Text] [Related]
4. Cross-linked peptide identification: A computational forest of algorithms.
Yılmaz Ş; Shiferaw GA; Rayo J; Economou A; Martens L; Vandermarliere E
Mass Spectrom Rev; 2018 Nov; 37(6):738-749. PubMed ID: 29529716
[TBL] [Abstract][Full Text] [Related]
5. Crosslinking combined with mass spectrometry for structural proteomics.
Petrotchenko EV; Borchers CH
Mass Spectrom Rev; 2010; 29(6):862-76. PubMed ID: 20730915
[TBL] [Abstract][Full Text] [Related]
6. Advances in protein complex analysis by chemical cross-linking coupled with mass spectrometry (CXMS) and bioinformatics.
Tran BQ; Goodlett DR; Goo YA
Biochim Biophys Acta; 2016 Jan; 1864(1):123-9. PubMed ID: 26025770
[TBL] [Abstract][Full Text] [Related]
7. Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data.
Petrotchenko EV; Borchers CH
Proteomics; 2014 Sep; 14(17-18):1987-9. PubMed ID: 24895266
[TBL] [Abstract][Full Text] [Related]
8. Identification of cross-linked peptides from large sequence databases.
Rinner O; Seebacher J; Walzthoeni T; Mueller LN; Beck M; Schmidt A; Mueller M; Aebersold R
Nat Methods; 2008 Apr; 5(4):315-8. PubMed ID: 18327264
[TBL] [Abstract][Full Text] [Related]
9. Optimized Cross-Linking Mass Spectrometry for in Situ Interaction Proteomics.
Ser Z; Cifani P; Kentsis A
J Proteome Res; 2019 Jun; 18(6):2545-2558. PubMed ID: 31083951
[TBL] [Abstract][Full Text] [Related]
10. A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database.
Buncherd H; Roseboom W; de Koning LJ; de Koster CG; de Jong L
J Proteomics; 2014 Aug; 108():65-77. PubMed ID: 24840472
[TBL] [Abstract][Full Text] [Related]
11. Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity.
Yu F; Li N; Yu W
J Proteome Res; 2017 Oct; 16(10):3942-3952. PubMed ID: 28825304
[TBL] [Abstract][Full Text] [Related]
12. Informatics strategies for large-scale novel cross-linking analysis.
Anderson GA; Tolic N; Tang X; Zheng C; Bruce JE
J Proteome Res; 2007 Sep; 6(9):3412-21. PubMed ID: 17676784
[TBL] [Abstract][Full Text] [Related]
13. Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy.
Huttlin EL; Hegeman AD; Harms AC; Sussman MR
J Proteome Res; 2007 Jan; 6(1):392-8. PubMed ID: 17203984
[TBL] [Abstract][Full Text] [Related]
14. Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking.
de Jong L; Roseboom W; Kramer G
Biochim Biophys Acta Proteins Proteom; 2021 Jul; 1869(7):140655. PubMed ID: 33812047
[TBL] [Abstract][Full Text] [Related]
15. Integrated Workflow for Structural Proteomics Studies Based on Cross-Linking/Mass Spectrometry with an MS/MS Cleavable Cross-Linker.
Arlt C; Götze M; Ihling CH; Hage C; Schäfer M; Sinz A
Anal Chem; 2016 Aug; 88(16):7930-7. PubMed ID: 27428000
[TBL] [Abstract][Full Text] [Related]
16. Evaluating protein interactions through cross-linking mass spectrometry.
Tabb DL
Nat Methods; 2012 Sep; 9(9):879-81. PubMed ID: 22936167
[No Abstract] [Full Text] [Related]
17. Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy.
Balgley BM; Laudeman T; Yang L; Song T; Lee CS
Mol Cell Proteomics; 2007 Sep; 6(9):1599-608. PubMed ID: 17533222
[TBL] [Abstract][Full Text] [Related]
18. Accurate Retention Time Prediction Based on Monolinked Peptide Information to Confidently Identify Cross-Linked Peptides.
Huang R; Zhu W; Xu Z; Chen J; Jiang B; Chen H; Chen W
J Am Soc Mass Spectrom; 2021 Sep; 32(9):2410-2416. PubMed ID: 34320809
[TBL] [Abstract][Full Text] [Related]
19. Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry.
Gao Q; Xue S; Doneanu CE; Shaffer SA; Goodlett DR; Nelson SD
Anal Chem; 2006 Apr; 78(7):2145-9. PubMed ID: 16579592
[TBL] [Abstract][Full Text] [Related]
20. Target-decoy approach and false discovery rate: when things may go wrong.
Gupta N; Bandeira N; Keich U; Pevzner PA
J Am Soc Mass Spectrom; 2011 Jul; 22(7):1111-20. PubMed ID: 21953092
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
