These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

296 related articles for article (PubMed ID: 22786784)

  • 1. Reference databases for taxonomic assignment in metagenomics.
    Santamaria M; Fosso B; Consiglio A; De Caro G; Grillo G; Licciulli F; Liuni S; Marzano M; Alonso-Alemany D; Valiente G; Pesole G
    Brief Bioinform; 2012 Nov; 13(6):682-95. PubMed ID: 22786784
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.
    Santamaria M; Fosso B; Licciulli F; Balech B; Larini I; Grillo G; De Caro G; Liuni S; Pesole G
    Nucleic Acids Res; 2018 Jan; 46(D1):D127-D132. PubMed ID: 29036529
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational challenges of sequence classification in microbiomic data.
    Ribeca P; Valiente G
    Brief Bioinform; 2011 Nov; 12(6):614-25. PubMed ID: 21504986
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 5. C16S - a Hidden Markov Model based algorithm for taxonomic classification of 16S rRNA gene sequences.
    Ghosh TS; Gajjalla P; Mohammed MH; Mande SS
    Genomics; 2012 Apr; 99(4):195-201. PubMed ID: 22326741
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
    Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
    J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Classification of metagenomic sequences: methods and challenges.
    Mande SS; Mohammed MH; Ghosh TS
    Brief Bioinform; 2012 Nov; 13(6):669-81. PubMed ID: 22962338
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.
    Kim M; Morrison M; Yu Z
    J Microbiol Methods; 2011 Jan; 84(1):81-7. PubMed ID: 21047533
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ITS1 versus ITS2 as DNA metabarcodes for fungi.
    Blaalid R; Kumar S; Nilsson RH; Abarenkov K; Kirk PM; Kauserud H
    Mol Ecol Resour; 2013 Mar; 13(2):218-24. PubMed ID: 23350562
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.
    Heeger F; Bourne EC; Baschien C; Yurkov A; Bunk B; Spröer C; Overmann J; Mazzoni CJ; Monaghan MT
    Mol Ecol Resour; 2018 Nov; 18(6):1500-1514. PubMed ID: 30106226
    [TBL] [Abstract][Full Text] [Related]  

  • 12. METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.
    Bengtsson-Palme J; Hartmann M; Eriksson KM; Pal C; Thorell K; Larsson DG; Nilsson RH
    Mol Ecol Resour; 2015 Nov; 15(6):1403-14. PubMed ID: 25732605
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A fast and robust protocol for metataxonomic analysis using RNAseq data.
    Cox JW; Ballweg RA; Taft DH; Velayutham P; Haslam DB; Porollo A
    Microbiome; 2017 Jan; 5(1):7. PubMed ID: 28103917
    [TBL] [Abstract][Full Text] [Related]  

  • 14. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
    Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
    BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.
    Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA polymerase beta subunit (rpoB) gene and the 16S-23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for phylogenetic analysis and identification of the species of the family Mycoplasmataceae.
    Volokhov DV; Simonyan V; Davidson MK; Chizhikov VE
    Mol Phylogenet Evol; 2012 Jan; 62(1):515-28. PubMed ID: 22115576
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Introduction to the analysis of environmental sequences: metagenomics with MEGAN.
    Huson DH; Mitra S
    Methods Mol Biol; 2012; 856():415-29. PubMed ID: 22399469
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of microbial diversity by pyrosequencing the small-subunit ribosomal RNA without PCR amplification.
    Li XR; Lv Y; Meng H; Gu JD; Quan ZX
    Appl Microbiol Biotechnol; 2014 Apr; 98(8):3777-89. PubMed ID: 24531274
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Novel primers for 16S rRNA-based archaeal community analyses in environmental samples.
    Gantner S; Andersson AF; Alonso-Sáez L; Bertilsson S
    J Microbiol Methods; 2011 Jan; 84(1):12-8. PubMed ID: 20940022
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.