These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 22790981)

  • 1. GFam: a platform for automatic annotation of gene families.
    Sasidharan R; Nepusz T; Swarbreck D; Huala E; Paccanaro A
    Nucleic Acids Res; 2012 Oct; 40(19):e152. PubMed ID: 22790981
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Applications of InterPro in protein annotation and genome analysis.
    Biswas M; O'Rourke JF; Camon E; Fraser G; Kanapin A; Karavidopoulou Y; Kersey P; Kriventseva E; Mittard V; Mulder N; Phan I; Servant F; Apweiler R
    Brief Bioinform; 2002 Sep; 3(3):285-95. PubMed ID: 12230037
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A domain-centric solution to functional genomics via dcGO Predictor.
    Fang H; Gough J
    BMC Bioinformatics; 2013; 14 Suppl 3(Suppl 3):S9. PubMed ID: 23514627
    [TBL] [Abstract][Full Text] [Related]  

  • 4. InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
    Mitchell AL; Attwood TK; Babbitt PC; Blum M; Bork P; Bridge A; Brown SD; Chang HY; El-Gebali S; Fraser MI; Gough J; Haft DR; Huang H; Letunic I; Lopez R; Luciani A; Madeira F; Marchler-Bauer A; Mi H; Natale DA; Necci M; Nuka G; Orengo C; Pandurangan AP; Paysan-Lafosse T; Pesseat S; Potter SC; Qureshi MA; Rawlings ND; Redaschi N; Richardson LJ; Rivoire C; Salazar GA; Sangrador-Vegas A; Sigrist CJA; Sillitoe I; Sutton GG; Thanki N; Thomas PD; Tosatto SCE; Yong SY; Finn RD
    Nucleic Acids Res; 2019 Jan; 47(D1):D351-D360. PubMed ID: 30398656
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The InterPro protein families database: the classification resource after 15 years.
    Mitchell A; Chang HY; Daugherty L; Fraser M; Hunter S; Lopez R; McAnulla C; McMenamin C; Nuka G; Pesseat S; Sangrador-Vegas A; Scheremetjew M; Rato C; Yong SY; Bateman A; Punta M; Attwood TK; Sigrist CJ; Redaschi N; Rivoire C; Xenarios I; Kahn D; Guyot D; Bork P; Letunic I; Gough J; Oates M; Haft D; Huang H; Natale DA; Wu CH; Orengo C; Sillitoe I; Mi H; Thomas PD; Finn RD
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D213-21. PubMed ID: 25428371
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification and distribution of protein families in 120 completed genomes using Gene3D.
    Lee D; Grant A; Marsden RL; Orengo C
    Proteins; 2005 May; 59(3):603-15. PubMed ID: 15768405
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.
    Wilson D; Pethica R; Zhou Y; Talbot C; Vogel C; Madera M; Chothia C; Gough J
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D380-6. PubMed ID: 19036790
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The InterPro protein families and domains database: 20 years on.
    Blum M; Chang HY; Chuguransky S; Grego T; Kandasaamy S; Mitchell A; Nuka G; Paysan-Lafosse T; Qureshi M; Raj S; Richardson L; Salazar GA; Williams L; Bork P; Bridge A; Gough J; Haft DH; Letunic I; Marchler-Bauer A; Mi H; Natale DA; Necci M; Orengo CA; Pandurangan AP; Rivoire C; Sigrist CJA; Sillitoe I; Thanki N; Thomas PD; Tosatto SCE; Wu CH; Bateman A; Finn RD
    Nucleic Acids Res; 2021 Jan; 49(D1):D344-D354. PubMed ID: 33156333
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CycADS: an annotation database system to ease the development and update of BioCyc databases.
    Vellozo AF; Véron AS; Baa-Puyoulet P; Huerta-Cepas J; Cottret L; Febvay G; Calevro F; Rahbé Y; Douglas AE; Gabaldón T; Sagot MF; Charles H; Colella S
    Database (Oxford); 2011; 2011():bar008. PubMed ID: 21474551
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein function annotation using protein domain family resources.
    Das S; Orengo CA
    Methods; 2016 Jan; 93():24-34. PubMed ID: 26434392
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PCAS--a precomputed proteome annotation database resource.
    Zhang Y; Yin Y; Chen Y; Gao G; Yu P; Luo J; Jiang Y
    BMC Genomics; 2003 Nov; 4(1):42. PubMed ID: 14594458
    [TBL] [Abstract][Full Text] [Related]  

  • 12. InterPro in 2017-beyond protein family and domain annotations.
    Finn RD; Attwood TK; Babbitt PC; Bateman A; Bork P; Bridge AJ; Chang HY; Dosztányi Z; El-Gebali S; Fraser M; Gough J; Haft D; Holliday GL; Huang H; Huang X; Letunic I; Lopez R; Lu S; Marchler-Bauer A; Mi H; Mistry J; Natale DA; Necci M; Nuka G; Orengo CA; Park Y; Pesseat S; Piovesan D; Potter SC; Rawlings ND; Redaschi N; Richardson L; Rivoire C; Sangrador-Vegas A; Sigrist C; Sillitoe I; Smithers B; Squizzato S; Sutton G; Thanki N; Thomas PD; Tosatto SC; Wu CH; Xenarios I; Yeh LS; Young SY; Mitchell AL
    Nucleic Acids Res; 2017 Jan; 45(D1):D190-D199. PubMed ID: 27899635
    [TBL] [Abstract][Full Text] [Related]  

  • 13. InterPro, progress and status in 2005.
    Mulder NJ; Apweiler R; Attwood TK; Bairoch A; Bateman A; Binns D; Bradley P; Bork P; Bucher P; Cerutti L; Copley R; Courcelle E; Das U; Durbin R; Fleischmann W; Gough J; Haft D; Harte N; Hulo N; Kahn D; Kanapin A; Krestyaninova M; Lonsdale D; Lopez R; Letunic I; Madera M; Maslen J; McDowall J; Mitchell A; Nikolskaya AN; Orchard S; Pagni M; Ponting CP; Quevillon E; Selengut J; Sigrist CJ; Silventoinen V; Studholme DJ; Vaughan R; Wu CH
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D201-5. PubMed ID: 15608177
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
    Das S; Lee D; Sillitoe I; Dawson NL; Lees JG; Orengo CA
    Bioinformatics; 2015 Nov; 31(21):3460-7. PubMed ID: 26139634
    [TBL] [Abstract][Full Text] [Related]  

  • 15. B2G-FAR, a species-centered GO annotation repository.
    Götz S; Arnold R; Sebastián-León P; Martín-Rodríguez S; Tischler P; Jehl MA; Dopazo J; Rattei T; Conesa A
    Bioinformatics; 2011 Apr; 27(7):919-24. PubMed ID: 21335611
    [TBL] [Abstract][Full Text] [Related]  

  • 16. HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.
    Lima T; Auchincloss AH; Coudert E; Keller G; Michoud K; Rivoire C; Bulliard V; de Castro E; Lachaize C; Baratin D; Phan I; Bougueleret L; Bairoch A
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D471-8. PubMed ID: 18849571
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene3D: Extensive prediction of globular domains in proteins.
    Lewis TE; Sillitoe I; Dawson N; Lam SD; Clarke T; Lee D; Orengo C; Lees J
    Nucleic Acids Res; 2018 Jan; 46(D1):D435-D439. PubMed ID: 29112716
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.
    Bradshaw CR; Surendranath V; Henschel R; Mueller MS; Habermann BH
    PLoS One; 2011 Mar; 6(3):e17568. PubMed ID: 21423752
    [TBL] [Abstract][Full Text] [Related]  

  • 19. InterPro: an integrated documentation resource for protein families, domains and functional sites.
    Mulder NJ; Apweiler R; Attwood TK; Bairoch A; Bateman A; Binns D; Biswas M; Bradley P; Bork P; Bucher P; Copley R; Courcelle E; Durbin R; Falquet L; Fleischmann W; Gouzy J; Griffith-Jones S; Haft D; Hermjakob H; Hulo N; Kahn D; Kanapin A; Krestyaninova M; Lopez R; Letunic I; Orchard S; Pagni M; Peyruc D; Ponting CP; Servant F; Sigrist CJ;
    Brief Bioinform; 2002 Sep; 3(3):225-35. PubMed ID: 12230031
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A multi-objective optimization approach accurately resolves protein domain architectures.
    Bernardes JS; Vieira FR; Zaverucha G; Carbone A
    Bioinformatics; 2016 Feb; 32(3):345-53. PubMed ID: 26458889
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.