333 related articles for article (PubMed ID: 22796720)
1. Gene expression analysis in biomarker research and early drug development using function tested reverse transcription quantitative real-time PCR assays.
Lohmann S; Herold A; Bergauer T; Belousov A; Betzl G; Demario M; Dietrich M; Luistro L; Poignée-Heger M; Schostack K; Simcox M; Walch H; Yin X; Zhong H; Weisser M
Methods; 2013 Jan; 59(1):10-9. PubMed ID: 22796720
[TBL] [Abstract][Full Text] [Related]
2. Illumina whole-genome complementary DNA-mediated annealing, selection, extension and ligation platform: assessing its performance in formalin-fixed, paraffin-embedded samples and identifying invasion pattern-related genes in oral squamous cell carcinoma.
Loudig O; Brandwein-Gensler M; Kim RS; Lin J; Isayeva T; Liu C; Segall JE; Kenny PA; Prystowsky MB
Hum Pathol; 2011 Dec; 42(12):1911-22. PubMed ID: 21683979
[TBL] [Abstract][Full Text] [Related]
3. MicroRNAs are suitable for assessment as biomarkers from formalin-fixed paraffin-embedded tissue, and miR-24 represents an appropriate reference microRNA for diffuse large B-cell lymphoma studies.
Culpin RE; Sieniawski M; Proctor SJ; Menon G; Mainou-Fowler T
J Clin Pathol; 2013 Mar; 66(3):249-52. PubMed ID: 23172553
[TBL] [Abstract][Full Text] [Related]
4. Identification of accurate reference genes for RT-qPCR analysis of formalin-fixed paraffin-embedded tissue from primary non-small cell lung cancers and brain and lymph node metastases.
Søes S; Sørensen BS; Alsner J; Overgaard J; Hager H; Hansen LL; Kristensen LS
Lung Cancer; 2013 Aug; 81(2):180-6. PubMed ID: 23643276
[TBL] [Abstract][Full Text] [Related]
5. Rt-PCR gene expression profiling of RNA from paraffin-embedded tissues prepared using a range of different fixatives and conditions.
Liu ML; Jeong J; Ambannavar R; Millward C; Baehner F; Sangli C; Dutta D; Pho M; Nguyen A; Cronin MT
Methods Mol Biol; 2011; 724():205-37. PubMed ID: 21370016
[TBL] [Abstract][Full Text] [Related]
6. Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue.
Specht K; Richter T; Müller U; Walch A; Werner M; Höfler H
Am J Pathol; 2001 Feb; 158(2):419-29. PubMed ID: 11159180
[TBL] [Abstract][Full Text] [Related]
7. Validation of putative reference genes for normalization of Q-RT-PCR data from paraffin-embedded lymphoid tissue.
Green TM; de Stricker K; Møller MB
Diagn Mol Pathol; 2009 Dec; 18(4):243-9. PubMed ID: 19861891
[TBL] [Abstract][Full Text] [Related]
8. Chemoresistance in non-small-cell lung cancer: can multidrug resistance markers predict the response of xenograft lung cancer models to chemotherapy?
Merk J; Rolff J; Dorn C; Leschber G; Fichtner I
Eur J Cardiothorac Surg; 2011 Jul; 40(1):e29-33. PubMed ID: 21420313
[TBL] [Abstract][Full Text] [Related]
9. Gene expression analysis of normal and colorectal cancer tissue samples from fresh frozen and matched formalin-fixed, paraffin-embedded (FFPE) specimens after manual and automated RNA isolation.
Kalmar A; Wichmann B; Galamb O; Spisák S; Tóth K; Leiszter K; Tulassay Z; Molnár B
Methods; 2013 Jan; 59(1):S16-9. PubMed ID: 23036325
[TBL] [Abstract][Full Text] [Related]
10. RT-PCR-based gene expression profiling for cancer biomarker discovery from fixed, paraffin-embedded tissues.
Scott A; Ambannavar R; Jeong J; Liu ML; Cronin MT
Methods Mol Biol; 2011; 724():239-57. PubMed ID: 21370017
[TBL] [Abstract][Full Text] [Related]
11. Biomarker discovery for colon cancer using a 761 gene RT-PCR assay.
Clark-Langone KM; Wu JY; Sangli C; Chen A; Snable JL; Nguyen A; Hackett JR; Baker J; Yothers G; Kim C; Cronin MT
BMC Genomics; 2007 Aug; 8():279. PubMed ID: 17697383
[TBL] [Abstract][Full Text] [Related]
12. Comparison of gene expression profiling by reverse transcription quantitative PCR between fresh frozen and formalin-fixed, paraffin-embedded breast cancer tissues.
Sánchez-Navarro I; Gámez-Pozo A; González-Barón M; Pinto-Marín A; Hardisson D; López R; Madero R; Cejas P; Mendiola M; Espinosa E; Vara JA
Biotechniques; 2010 May; 48(5):389-97. PubMed ID: 20569212
[TBL] [Abstract][Full Text] [Related]
13. Optimized protocol for gene expression analysis in formalin-fixed, paraffin-embedded tissue using real-time quantitative polymerase chain reaction.
Votavova H; Forsterova K; Stritesky J; Velenska Z; Trneny M
Diagn Mol Pathol; 2009 Sep; 18(3):176-82. PubMed ID: 19704263
[TBL] [Abstract][Full Text] [Related]
14. Real-time quantitative RT-PCR shows variable, assay-dependent sensitivity to formalin fixation: implications for direct comparison of transcript levels in paraffin-embedded tissues.
Koch I; Slotta-Huspenina J; Hollweck R; Anastasov N; Hofler H; Quintanilla-Martinez L; Fend F
Diagn Mol Pathol; 2006 Sep; 15(3):149-56. PubMed ID: 16932070
[TBL] [Abstract][Full Text] [Related]
15. FFPE tissue as a feasible source for gene expression analysis--a comparison of three reference genes and one tumor marker.
Walter RF; Mairinger FD; Wohlschlaeger J; Worm K; Ting S; Vollbrecht C; Schmid KW; Hager T
Pathol Res Pract; 2013 Dec; 209(12):784-9. PubMed ID: 24156825
[TBL] [Abstract][Full Text] [Related]
16. Clinical validity of the lung cancer biomarkers identified by bioinformatics analysis of public expression data.
Kim B; Lee HJ; Choi HY; Shin Y; Nam S; Seo G; Son DS; Jo J; Kim J; Lee J; Kim J; Kim K; Lee S
Cancer Res; 2007 Aug; 67(15):7431-8. PubMed ID: 17671213
[TBL] [Abstract][Full Text] [Related]
17. Cell cycle protein cyclin Y is associated with human non-small-cell lung cancer proliferation and tumorigenesis.
Yue W; Zhao X; Zhang L; Xu S; Liu Z; Ma L; Jia W; Qian Z; Zhang C; Wang Y; Yang X
Clin Lung Cancer; 2011 Jan; 12(1):43-50. PubMed ID: 21273179
[TBL] [Abstract][Full Text] [Related]
18. Optimization of RNA extraction from formalin-fixed, paraffin-embedded lymphoid tissues.
Chen J; Byrne GE; Lossos IS
Diagn Mol Pathol; 2007 Jun; 16(2):61-72. PubMed ID: 17525674
[TBL] [Abstract][Full Text] [Related]
19. Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications.
Ruijter JM; Pfaffl MW; Zhao S; Spiess AN; Boggy G; Blom J; Rutledge RG; Sisti D; Lievens A; De Preter K; Derveaux S; Hellemans J; Vandesompele J
Methods; 2013 Jan; 59(1):32-46. PubMed ID: 22975077
[TBL] [Abstract][Full Text] [Related]
20. Quantitative determination of estrogen receptor, progesterone receptor, and HER2 mRNA in formalin-fixed paraffin-embedded tissue--a new option for predictive biomarker assessment in breast cancer.
Müller BM; Kronenwett R; Hennig G; Euting H; Weber K; Bohmann K; Weichert W; Altmann G; Roth C; Winzer KJ; Kristiansen G; Petry C; Dietel M; Denkert C
Diagn Mol Pathol; 2011 Mar; 20(1):1-10. PubMed ID: 21326033
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
