These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

132 related articles for article (PubMed ID: 22800377)

  • 1. Slim-filter: an interactive Windows-based application for illumina genome analyzer data assessment and manipulation.
    Golovko G; Khanipov K; Rojas M; Martinez-Alcántara A; Howard JJ; Ballesteros E; Gupta S; Widger W; Fofanov Y
    BMC Bioinformatics; 2012 Jul; 13():166. PubMed ID: 22800377
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.
    Martínez-Alcántara A; Ballesteros E; Feng C; Rojas M; Koshinsky H; Fofanov VY; Havlak P; Fofanov Y
    Bioinformatics; 2009 Sep; 25(18):2438-9. PubMed ID: 19602525
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Blue: correcting sequencing errors using consensus and context.
    Greenfield P; Duesing K; Papanicolaou A; Bauer DC
    Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926
    [TBL] [Abstract][Full Text] [Related]  

  • 5. QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.
    Meglécz E; Costedoat C; Dubut V; Gilles A; Malausa T; Pech N; Martin JF
    Bioinformatics; 2010 Feb; 26(3):403-4. PubMed ID: 20007741
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Broom: application for non-redundant storage of high throughput sequencing data.
    Albayrak L; Khanipov K; Golovko G; Fofanov Y
    Bioinformatics; 2019 Jan; 35(1):143-145. PubMed ID: 30010786
    [TBL] [Abstract][Full Text] [Related]  

  • 7. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files.
    Telatin A; Fariselli P; Birolo G
    Bioengineering (Basel); 2021 May; 8(5):. PubMed ID: 34066939
    [TBL] [Abstract][Full Text] [Related]  

  • 9. StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies.
    Bacci G; Bazzicalupo M; Benedetti A; Mengoni A
    Mol Ecol Resour; 2014 Mar; 14(2):426-34. PubMed ID: 24128146
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NanoSim: nanopore sequence read simulator based on statistical characterization.
    Yang C; Chu J; Warren RL; Birol I
    Gigascience; 2017 Apr; 6(4):1-6. PubMed ID: 28327957
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimal spliced alignments of short sequence reads.
    De Bona F; Ossowski S; Schneeberger K; Rätsch G
    Bioinformatics; 2008 Aug; 24(16):i174-80. PubMed ID: 18689821
    [TBL] [Abstract][Full Text] [Related]  

  • 13. jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator.
    Nell LA
    Mol Ecol Resour; 2020 Jul; 20(4):1132-1140. PubMed ID: 32320523
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
    Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T
    BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 16. De novo assembly of short sequence reads.
    Paszkiewicz K; Studholme DJ
    Brief Bioinform; 2010 Sep; 11(5):457-72. PubMed ID: 20724458
    [TBL] [Abstract][Full Text] [Related]  

  • 17. NxTrim: optimized trimming of Illumina mate pair reads.
    O'Connell J; Schulz-Trieglaff O; Carlson E; Hims MM; Gormley NA; Cox AJ
    Bioinformatics; 2015 Jun; 31(12):2035-7. PubMed ID: 25661542
    [TBL] [Abstract][Full Text] [Related]  

  • 18. TagDust2: a generic method to extract reads from sequencing data.
    Lassmann T
    BMC Bioinformatics; 2015 Jan; 16():24. PubMed ID: 25627334
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genotype calling from next-generation sequencing data using haplotype information of reads.
    Zhi D; Wu J; Liu N; Zhang K
    Bioinformatics; 2012 Apr; 28(7):938-46. PubMed ID: 22285565
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
    Chandak S; Tatwawadi K; Weissman T
    Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.