BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

101 related articles for article (PubMed ID: 22806945)

  • 1. Characterizing the morphology of protein binding patches.
    Malod-Dognin N; Bansal A; Cazals F
    Proteins; 2012 Dec; 80(12):2652-65. PubMed ID: 22806945
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.
    Shazman S; Celniker G; Haber O; Glaser F; Mandel-Gutfreund Y
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W526-30. PubMed ID: 17537808
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling macro-molecular interfaces with Intervor.
    Loriot S; Cazals F
    Bioinformatics; 2010 Apr; 26(7):964-5. PubMed ID: 20139468
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H; Raz R; Schreiber G
    J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Geometry-based flexible and symmetric protein docking.
    Schneidman-Duhovny D; Inbar Y; Nussinov R; Wolfson HJ
    Proteins; 2005 Aug; 60(2):224-31. PubMed ID: 15981269
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein-protein docking dealing with the unknown.
    Moreira IS; Fernandes PA; Ramos MJ
    J Comput Chem; 2010 Jan; 31(2):317-42. PubMed ID: 19462412
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fitting a geometric graph to a protein-protein interaction network.
    Higham DJ; Rasajski M; Przulj N
    Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S; May P; Hoppe A; Frömmel C; Preissner R
    Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification of human protein complexes from local sub-graphs of protein-protein interaction network based on random forest with topological structure features.
    Li ZC; Lai YH; Chen LL; Zhou X; Dai Z; Zou XY
    Anal Chim Acta; 2012 Mar; 718():32-41. PubMed ID: 22305895
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PIBASE: a comprehensive database of structurally defined protein interfaces.
    Davis FP; Sali A
    Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Automatic epitope recognition in proteins oriented to the system for macromolecular interaction assessment MIAX.
    Yoshimori A; Del Carpio CA
    Genome Inform; 2001; 12():113-22. PubMed ID: 11791230
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?
    Pabo CO; Nekludova L
    J Mol Biol; 2000 Aug; 301(3):597-624. PubMed ID: 10966773
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Classification of protein complexes based on docking difficulty.
    Vajda S
    Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure-based prediction of protein-peptide specificity in Rosetta.
    King CA; Bradley P
    Proteins; 2010 Dec; 78(16):3437-49. PubMed ID: 20954182
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ATTRACT: protein-protein docking in CAPRI using a reduced protein model.
    Zacharias M
    Proteins; 2005 Aug; 60(2):252-6. PubMed ID: 15981270
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling.
    Wu MY; Dai DQ; Yan H
    Proteins; 2012 Aug; 80(9):2137-53. PubMed ID: 22544808
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.