These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 22809386)

  • 1. Using rigidity analysis to probe mutation-induced structural changes in proteins.
    Jagodzinski F; Hardy J; Streinu I
    J Bioinform Comput Biol; 2012 Jun; 10(3):1242010. PubMed ID: 22809386
    [TBL] [Abstract][Full Text] [Related]  

  • 2. KINARI-Web: a server for protein rigidity analysis.
    Fox N; Jagodzinski F; Li Y; Streinu I
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W177-83. PubMed ID: 21693559
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rigidity analysis of protein biological assemblies and periodic crystal structures.
    Jagodzinski F; Clark P; Grant J; Liu T; Monastra S; Streinu I
    BMC Bioinformatics; 2013; 14 Suppl 18(Suppl 18):S2. PubMed ID: 24564201
    [TBL] [Abstract][Full Text] [Related]  

  • 4. iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations.
    Huang LT; Gromiha MM; Ho SY
    Bioinformatics; 2007 May; 23(10):1292-3. PubMed ID: 17379687
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mutation Sensitivity Maps: Identifying Residue Substitutions That Impact Protein Structure Via a Rigidity Analysis In Silico Mutation Approach.
    Siderius M; Jagodzinski F
    J Comput Biol; 2018 Jan; 25(1):89-102. PubMed ID: 29035580
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Towards accurate modeling of noncovalent interactions for protein rigidity analysis.
    Fox N; Streinu I
    BMC Bioinformatics; 2013; 14 Suppl 18(Suppl 18):S3. PubMed ID: 24564209
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of protein stability upon point mutations.
    Gromiha MM
    Biochem Soc Trans; 2007 Dec; 35(Pt 6):1569-73. PubMed ID: 18031268
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SCRATCH: a protein structure and structural feature prediction server.
    Cheng J; Randall AZ; Sweredoski MJ; Baldi P
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W72-6. PubMed ID: 15980571
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting the Effect of Single and Multiple Mutations on Protein Structural Stability.
    Dehghanpoor R; Ricks E; Hursh K; Gunderson S; Farhoodi R; Haspel N; Hutchinson B; Jagodzinski F
    Molecules; 2018 Jan; 23(2):. PubMed ID: 29382060
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.
    Goldschmidt L; Cooper DR; Derewenda ZS; Eisenberg D
    Protein Sci; 2007 Aug; 16(8):1569-76. PubMed ID: 17656576
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ProSAT2--Protein Structure Annotation Server.
    Gabdoulline RR; Ulbrich S; Richter S; Wade RC
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W79-83. PubMed ID: 16845114
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CUPSAT: prediction of protein stability upon point mutations.
    Parthiban V; Gromiha MM; Schomburg D
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W239-42. PubMed ID: 16845001
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.
    Terribilini M; Sander JD; Lee JH; Zaback P; Jernigan RL; Honavar V; Dobbs D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W578-84. PubMed ID: 17483510
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality.
    Dehouck Y; Kwasigroch JM; Gilis D; Rooman M
    BMC Bioinformatics; 2011 May; 12():151. PubMed ID: 21569468
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures.
    Barroso JRMS; Mariano D; Dias SR; Rocha REO; Santos LH; Nagem RAP; de Melo-Minardi RC
    BMC Bioinformatics; 2020 Jul; 21(1):275. PubMed ID: 32611389
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The FoldX web server: an online force field.
    Schymkowitz J; Borg J; Stricher F; Nys R; Rousseau F; Serrano L
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W382-8. PubMed ID: 15980494
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CX, DPX, and PCW: Web Servers for the Visualization of Interior and Protruding Regions of Protein Structures in 3D and 1D.
    Ligeti B; Vera R; Juhász J; Pongor S
    Methods Mol Biol; 2017; 1484():301-309. PubMed ID: 27787834
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reliable prediction of protein thermostability change upon double mutation from amino acid sequence.
    Huang LT; Gromiha MM
    Bioinformatics; 2009 Sep; 25(17):2181-7. PubMed ID: 19535532
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Matching Multiple Rigid Domain Decompositions of Proteins.
    Flynn E; Streinu I
    IEEE Trans Nanobioscience; 2017 Mar; 16(2):81-90. PubMed ID: 28141528
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Average assignment method for predicting the stability of protein mutants.
    Saraboji K; Gromiha MM; Ponnuswamy MN
    Biopolymers; 2006 May; 82(1):80-92. PubMed ID: 16453276
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.