These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
117 related articles for article (PubMed ID: 22809386)
21. SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis. Liang H; Zhou W; Landweber LF Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W382-4. PubMed ID: 16845032 [TBL] [Abstract][Full Text] [Related]
22. fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies. Tung CH; Yang JM Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W438-43. PubMed ID: 17485476 [TBL] [Abstract][Full Text] [Related]
23. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank. Bastolla U; Porto M; Roman HE; Vendruscolo M BMC Evol Biol; 2006 May; 6():43. PubMed ID: 16737532 [TBL] [Abstract][Full Text] [Related]
24. CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Dundas J; Ouyang Z; Tseng J; Binkowski A; Turpaz Y; Liang J Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W116-8. PubMed ID: 16844972 [TBL] [Abstract][Full Text] [Related]
26. HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering. Bendl J; Stourac J; Sebestova E; Vavra O; Musil M; Brezovsky J; Damborsky J Nucleic Acids Res; 2016 Jul; 44(W1):W479-87. PubMed ID: 27174934 [TBL] [Abstract][Full Text] [Related]
27. FAST: a novel protein structure alignment algorithm. Zhu J; Weng Z Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341 [TBL] [Abstract][Full Text] [Related]
28. BLAST-based structural annotation of protein residues using Protein Data Bank. Singh H; Raghava GP Biol Direct; 2016 Jan; 11(1):4. PubMed ID: 26810894 [TBL] [Abstract][Full Text] [Related]
29. SDR: a database of predicted specificity-determining residues in proteins. Donald JE; Shakhnovich EI Nucleic Acids Res; 2009 Jan; 37(Database issue):D191-4. PubMed ID: 18927118 [TBL] [Abstract][Full Text] [Related]
30. Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Wainreb G; Wolf L; Ashkenazy H; Dehouck Y; Ben-Tal N Bioinformatics; 2011 Dec; 27(23):3286-92. PubMed ID: 21998155 [TBL] [Abstract][Full Text] [Related]
31. Robust prediction of mutation-induced protein stability change by property encoding of amino acids. Kang S; Chen G; Xiao G Protein Eng Des Sel; 2009 Feb; 22(2):75-83. PubMed ID: 19054789 [TBL] [Abstract][Full Text] [Related]
32. SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations. Petukh M; Dai L; Alexov E Int J Mol Sci; 2016 Apr; 17(4):547. PubMed ID: 27077847 [TBL] [Abstract][Full Text] [Related]
33. TKSA-MC: A web server for rational mutation through the optimization of protein charge interactions. Contessoto VG; de Oliveira VM; Fernandes BR; Slade GG; Leite VBP Proteins; 2018 Nov; 86(11):1184-1188. PubMed ID: 30218467 [TBL] [Abstract][Full Text] [Related]
34. The SAAPdb web resource: a large-scale structural analysis of mutant proteins. Hurst JM; McMillan LE; Porter CT; Allen J; Fakorede A; Martin AC Hum Mutat; 2009 Apr; 30(4):616-24. PubMed ID: 19191322 [TBL] [Abstract][Full Text] [Related]
35. A multiscale approach to predicting affinity changes in protein-protein interfaces. Dourado DF; Flores SC Proteins; 2014 Oct; 82(10):2681-90. PubMed ID: 24975440 [TBL] [Abstract][Full Text] [Related]
36. BindML/BindML+: Detecting Protein-Protein Interaction Interface Propensity from Amino Acid Substitution Patterns. Wei Q; La D; Kihara D Methods Mol Biol; 2017; 1529():279-289. PubMed ID: 27914057 [TBL] [Abstract][Full Text] [Related]
38. Prediction of protein mutant stability using classification and regression tool. Huang LT; Saraboji K; Ho SY; Hwang SF; Ponnuswamy MN; Gromiha MM Biophys Chem; 2007 Feb; 125(2-3):462-70. PubMed ID: 17113702 [TBL] [Abstract][Full Text] [Related]
39. Prediction of protein stability changes for single-site mutations using support vector machines. Cheng J; Randall A; Baldi P Proteins; 2006 Mar; 62(4):1125-32. PubMed ID: 16372356 [TBL] [Abstract][Full Text] [Related]
40. pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins. Binkowski TA; Freeman P; Liang J Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W555-8. PubMed ID: 15215448 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]