BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

130 related articles for article (PubMed ID: 22820020)

  • 21. Is multiple-sequence alignment required for accurate inference of phylogeny?
    Höhl M; Ragan MA
    Syst Biol; 2007 Apr; 56(2):206-21. PubMed ID: 17454975
    [TBL] [Abstract][Full Text] [Related]  

  • 22. An improved model for whole genome phylogenetic analysis by Fourier transform.
    Yin C; Yau SS
    J Theor Biol; 2015 Oct; 382():99-110. PubMed ID: 26151589
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages.
    Li J; Halgamuge SK; Kells CI; Tang SL
    BMC Bioinformatics; 2007 May; 8 Suppl 4(Suppl 4):S6. PubMed ID: 17570149
    [TBL] [Abstract][Full Text] [Related]  

  • 24. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 25. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Comparing programs and methods to use for global multiple sequence alignment.
    Mount DW
    Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.ip61. PubMed ID: 20147201
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.
    Fritzsch G; Schlegel M; Stadler PF
    J Theor Biol; 2006 Jun; 240(4):511-20. PubMed ID: 16325206
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Detecting interspecific recombination with a pruned probabilistic divergence measure.
    Husmeier D; Wright F; Milne I
    Bioinformatics; 2005 May; 21(9):1797-806. PubMed ID: 15572473
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Potential use of host-derived genome signatures to root virus phylogenies.
    Simmons MP
    Mol Phylogenet Evol; 2008 Dec; 49(3):969-78. PubMed ID: 18793737
    [TBL] [Abstract][Full Text] [Related]  

  • 30. An efficient binomial model-based measure for sequence comparison and its application.
    Liu X; Dai Q; Li L; He Z
    J Biomol Struct Dyn; 2011 Apr; 28(5):833-43. PubMed ID: 21294594
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences.
    Koonin EV; Dolja VV
    Crit Rev Biochem Mol Biol; 1993; 28(5):375-430. PubMed ID: 8269709
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.
    Ninio M; Privman E; Pupko T; Friedman N
    Bioinformatics; 2007 Jan; 23(2):e136-41. PubMed ID: 17237082
    [TBL] [Abstract][Full Text] [Related]  

  • 33. An alignment-free method to find similarity among protein sequences via the general form of Chou's pseudo amino acid composition.
    Gupta MK; Niyogi R; Misra M
    SAR QSAR Environ Res; 2013; 24(7):597-609. PubMed ID: 23710804
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Alignment-free phylogenetics and population genetics.
    Haubold B
    Brief Bioinform; 2014 May; 15(3):407-18. PubMed ID: 24291823
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Nucleotide sequence and deduced amino acid sequence of the nonstructural proteins of dengue type 3 virus, Bangkok genotype.
    Attatippaholkun WH; Attatippaholkun MK; Nisalak A; Vaughn DW; Innis BL
    Southeast Asian J Trop Med Public Health; 1998 Jun; 29(2):361-6. PubMed ID: 9886128
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison.
    Dai Q; Yang Y; Wang T
    Bioinformatics; 2008 Oct; 24(20):2296-302. PubMed ID: 18710871
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Alignment methods: strategies, challenges, benchmarking, and comparative overview.
    Löytynoja A
    Methods Mol Biol; 2012; 855():203-35. PubMed ID: 22407710
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Extraction of high quality k-words for alignment-free sequence comparison.
    Gunasinghe U; Alahakoon D; Bedingfield S
    J Theor Biol; 2014 Oct; 358():31-51. PubMed ID: 24846728
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A Multiresolution Graphical Representation for Similarity Relationship and Multiresolution Clustering for Biological Sequences.
    Yang L; Zhang W
    J Comput Biol; 2017 Apr; 24(4):299-310. PubMed ID: 27992242
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Sequence alignment, mutual information, and dissimilarity measures for constructing phylogenies.
    Penner O; Grassberger P; Paczuski M
    PLoS One; 2011 Jan; 6(1):e14373. PubMed ID: 21245917
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.