150 related articles for article (PubMed ID: 22828336)
1. Folding a protein with equal probability of being helix or hairpin.
Lin CY; Chen NY; Mou CY
Biophys J; 2012 Jul; 103(1):99-108. PubMed ID: 22828336
[TBL] [Abstract][Full Text] [Related]
2. Transformation of a design peptide between the α-helix and β-hairpin structures using a helix-strand replica-exchange molecular dynamics simulation.
Okumura H; Itoh SG
Phys Chem Chem Phys; 2013 Sep; 15(33):13852-61. PubMed ID: 23839056
[TBL] [Abstract][Full Text] [Related]
3. Empirical parameterization of a model for predicting peptide helix/coil equilibrium populations.
Andersen NH; Tong H
Protein Sci; 1997 Sep; 6(9):1920-36. PubMed ID: 9300492
[TBL] [Abstract][Full Text] [Related]
4. Free energy determinants of secondary structure formation: I. alpha-Helices.
Yang AS; Honig B
J Mol Biol; 1995 Sep; 252(3):351-65. PubMed ID: 7563056
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics simulations of synthetic peptide folding.
Sung SS; Wu XW
Proteins; 1996 Jun; 25(2):202-14. PubMed ID: 8811736
[TBL] [Abstract][Full Text] [Related]
6. The balance between side-chain and backbone-driven association in folding of the α-helical influenza A transmembrane peptide.
Stylianakis I; Shalev A; Scheiner S; Sigalas MP; Arkin IT; Glykos N; Kolocouris A
J Comput Chem; 2020 Sep; 41(25):2177-2188. PubMed ID: 32735736
[TBL] [Abstract][Full Text] [Related]
7. Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field.
Buck PM; Bystroff C
Proteins; 2009 Aug; 76(2):331-42. PubMed ID: 19137613
[TBL] [Abstract][Full Text] [Related]
8. Folding or misfolding: the choice of β-hairpin.
Shao Q
J Phys Chem B; 2015 Mar; 119(10):3893-900. PubMed ID: 25692381
[TBL] [Abstract][Full Text] [Related]
9. Folding of a helix at room temperature is critically aided by electrostatic polarization of intraprotein hydrogen bonds.
Duan LL; Mei Y; Zhang D; Zhang QG; Zhang JZ
J Am Chem Soc; 2010 Aug; 132(32):11159-64. PubMed ID: 20698682
[TBL] [Abstract][Full Text] [Related]
10. Native topology or specific interactions: what is more important for protein folding?
Ferrara P; Caflisch A
J Mol Biol; 2001 Mar; 306(4):837-50. PubMed ID: 11243792
[TBL] [Abstract][Full Text] [Related]
11. Conformational landscape of the HIV-V3 hairpin loop from all-atom free-energy simulations.
Verma A; Wenzel W
J Chem Phys; 2008 Mar; 128(10):105103. PubMed ID: 18345927
[TBL] [Abstract][Full Text] [Related]
12. Enhanced Sampling of Coarse-Grained Transmembrane-Peptide Structure Formation from Hydrogen-Bond Replica Exchange.
Bereau T; Deserno M
J Membr Biol; 2015 Jun; 248(3):395-405. PubMed ID: 25311530
[TBL] [Abstract][Full Text] [Related]
13. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
14. Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences.
Ma B; Nussinov R
Protein Sci; 2003 Sep; 12(9):1882-93. PubMed ID: 12930988
[TBL] [Abstract][Full Text] [Related]
15. Effects of a mutation on the folding mechanism of a beta-hairpin.
Juraszek J; Bolhuis PG
J Phys Chem B; 2009 Dec; 113(50):16184-96. PubMed ID: 19924848
[TBL] [Abstract][Full Text] [Related]
16. GB1 hairpin kinetics: capturing the folding pathway with molecular dynamics, replica exchange and optimal dimensionality reduction.
Kuczera K; Szoszkiewicz R; Shaffer CL; Jas GS
J Biomol Struct Dyn; 2023; 41(21):11671-11680. PubMed ID: 36591705
[TBL] [Abstract][Full Text] [Related]
17. Competing interactions contributing to alpha-helical stability in aqueous solution.
Bodkin MJ; Goodfellow JM
Protein Sci; 1995 Apr; 4(4):603-12. PubMed ID: 7613460
[TBL] [Abstract][Full Text] [Related]
18. Molecular dynamics simulations of folding processes of a beta-hairpin in an implicit solvent.
Chen C; Xiao Y
Phys Biol; 2006 Aug; 3(3):161-71. PubMed ID: 17021380
[TBL] [Abstract][Full Text] [Related]
19. Folding of a helix is critically stabilized by polarization of backbone hydrogen bonds: study in explicit water.
Duan LL; Gao Y; Mei Y; Zhang QG; Tang B; Zhang JZ
J Phys Chem B; 2012 Mar; 116(10):3430-5. PubMed ID: 22369598
[TBL] [Abstract][Full Text] [Related]
20. Ultrafast folding and molecular dynamics of a linear hydrophobic β-hairpin.
Raghavender US
J Biomol Struct Dyn; 2013 Dec; 31(12):1404-10. PubMed ID: 23145986
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]