BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 22829571)

  • 1. ADOPS--Automatic Detection Of Positively Selected Sites.
    Reboiro-Jato D; Reboiro-Jato M; Fdez-Riverola F; Vieira CP; Fonseca NA; Vieira J
    J Integr Bioinform; 2012 Jul; 9(3):200. PubMed ID: 22829571
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects.
    Vázquez N; Vieira CP; Amorim BSR; Torres A; López-Fernández H; Fdez-Riverola F; Sousa JLR; Reboiro-Jato M; Vieira J
    Interdiscip Sci; 2018 Mar; 10(1):24-32. PubMed ID: 29383564
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Selection of models of DNA evolution with jModelTest.
    Posada D
    Methods Mol Biol; 2009; 537():93-112. PubMed ID: 19378141
    [TBL] [Abstract][Full Text] [Related]  

  • 4. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.
    Stern A; Doron-Faigenboim A; Erez E; Martz E; Bacharach E; Pupko T
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W506-11. PubMed ID: 17586822
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
    La D; Livesay DR
    BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Statistical properties of the methods for detecting positively selected amino acid sites.
    Suzuki Y
    Gene; 2006 Jan; 365():125-9. PubMed ID: 16256279
    [TBL] [Abstract][Full Text] [Related]  

  • 8. preAssemble: a tool for automatic sequencer trace data processing.
    Adzhubei AA; Laerdahl JK; Vlasova AV
    BMC Bioinformatics; 2006 Jan; 7():22. PubMed ID: 16417643
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SeqVis: a tool for detecting compositional heterogeneity among aligned nucleotide sequences.
    Jermiin LS; Ho JW; Lau KW; Jayaswal V
    Methods Mol Biol; 2009; 537():65-91. PubMed ID: 19378140
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Vestige: maximum likelihood phylogenetic footprinting.
    Wakefield MJ; Maxwell P; Huttley GA
    BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
    [TBL] [Abstract][Full Text] [Related]  

  • 11. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BADASP: predicting functional specificity in protein families using ancestral sequences.
    Edwards RJ; Shields DC
    Bioinformatics; 2005 Nov; 21(22):4190-1. PubMed ID: 16159912
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Using multiple sequence alignment editors and formatters.
    Mount DW
    Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.top45. PubMed ID: 20147226
    [TBL] [Abstract][Full Text] [Related]  

  • 15. jModelTest: phylogenetic model averaging.
    Posada D
    Mol Biol Evol; 2008 Jul; 25(7):1253-6. PubMed ID: 18397919
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
    Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.
    Dutheil J; Gaillard S; Bazin E; Glémin S; Ranwez V; Galtier N; Belkhir K
    BMC Bioinformatics; 2006 Apr; 7():188. PubMed ID: 16594991
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Automatic identification of large collections of protein-coding or rRNA sequences.
    Arigon AM; Perrière G; Gouy M
    Biochimie; 2008 Apr; 90(4):609-14. PubMed ID: 17920750
    [TBL] [Abstract][Full Text] [Related]  

  • 19. EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments.
    Gelly JC; Chiche L; Gracy J
    BMC Bioinformatics; 2005 Jan; 6():4. PubMed ID: 15638949
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J; Deremble C; Carbone A
    Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.