250 related articles for article (PubMed ID: 22833526)
1. DELIMINATE--a fast and efficient method for loss-less compression of genomic sequences: sequence analysis.
Mohammed MH; Dutta A; Bose T; Chadaram S; Mande SS
Bioinformatics; 2012 Oct; 28(19):2527-9. PubMed ID: 22833526
[TBL] [Abstract][Full Text] [Related]
2. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Hach F; Numanagic I; Alkan C; Sahinalp SC
Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
[TBL] [Abstract][Full Text] [Related]
3. BIND - an algorithm for loss-less compression of nucleotide sequence data.
Bose T; Mohammed MH; Dutta A; Mande SS
J Biosci; 2012 Sep; 37(4):785-9. PubMed ID: 22922203
[TBL] [Abstract][Full Text] [Related]
4. FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets.
Dutta A; Haque MM; Bose T; Reddy CV; Mande SS
J Bioinform Comput Biol; 2015 Jun; 13(3):1541003. PubMed ID: 25790783
[TBL] [Abstract][Full Text] [Related]
5. ERGC: an efficient referential genome compression algorithm.
Saha S; Rajasekaran S
Bioinformatics; 2015 Nov; 31(21):3468-75. PubMed ID: 26139636
[TBL] [Abstract][Full Text] [Related]
6. Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences.
Kryukov K; Ueda MT; Nakagawa S; Imanishi T
Bioinformatics; 2019 Oct; 35(19):3826-3828. PubMed ID: 30799504
[TBL] [Abstract][Full Text] [Related]
7. LFQC: a lossless compression algorithm for FASTQ files.
Nicolae M; Pathak S; Rajasekaran S
Bioinformatics; 2015 Oct; 31(20):3276-81. PubMed ID: 26093148
[TBL] [Abstract][Full Text] [Related]
8. Compression of DNA sequence reads in FASTQ format.
Deorowicz S; Grabowski S
Bioinformatics; 2011 Mar; 27(6):860-2. PubMed ID: 21252073
[TBL] [Abstract][Full Text] [Related]
9. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
10. MAFCO: a compression tool for MAF files.
Matos LM; Neves AJ; Pratas D; Pinho AJ
PLoS One; 2015; 10(3):e0116082. PubMed ID: 25816229
[TBL] [Abstract][Full Text] [Related]
11. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
Chandak S; Tatwawadi K; Weissman T
Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
[TBL] [Abstract][Full Text] [Related]
12. FaStore: a space-saving solution for raw sequencing data.
Roguski L; Ochoa I; Hernaez M; Deorowicz S
Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939
[TBL] [Abstract][Full Text] [Related]
13. Genome compression: a novel approach for large collections.
Deorowicz S; Danek A; Grabowski S
Bioinformatics; 2013 Oct; 29(20):2572-8. PubMed ID: 23969136
[TBL] [Abstract][Full Text] [Related]
14. Reference-based compression of short-read sequences using path encoding.
Kingsford C; Patro R
Bioinformatics; 2015 Jun; 31(12):1920-8. PubMed ID: 25649622
[TBL] [Abstract][Full Text] [Related]
15. GTRAC: fast retrieval from compressed collections of genomic variants.
Tatwawadi K; Hernaez M; Ochoa I; Weissman T
Bioinformatics; 2016 Sep; 32(17):i479-i486. PubMed ID: 27587665
[TBL] [Abstract][Full Text] [Related]
16. Data-dependent bucketing improves reference-free compression of sequencing reads.
Patro R; Kingsford C
Bioinformatics; 2015 Sep; 31(17):2770-7. PubMed ID: 25910696
[TBL] [Abstract][Full Text] [Related]
17. CoGI: Towards Compressing Genomes as an Image.
Xie X; Zhou S; Guan J
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1275-85. PubMed ID: 26671800
[TBL] [Abstract][Full Text] [Related]
18. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
Paridaens T; Van Wallendael G; De Neve W; Lambert P
Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
[TBL] [Abstract][Full Text] [Related]
19. DSRC 2--Industry-oriented compression of FASTQ files.
Roguski L; Deorowicz S
Bioinformatics; 2014 Aug; 30(15):2213-5. PubMed ID: 24747219
[TBL] [Abstract][Full Text] [Related]
20. METHCOMP: a special purpose compression platform for DNA methylation data.
Peng J; Milenkovic O; Ochoa I
Bioinformatics; 2018 Aug; 34(15):2654-2656. PubMed ID: 29528370
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]