These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

100 related articles for article (PubMed ID: 22844100)

  • 1. HapZipper: sharing HapMap populations just got easier.
    Chanda P; Elhaik E; Bader JS
    Nucleic Acids Res; 2012 Nov; 40(20):e159. PubMed ID: 22844100
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
    Hach F; Numanagic I; Alkan C; Sahinalp SC
    Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences.
    Kryukov K; Ueda MT; Nakagawa S; Imanishi T
    Bioinformatics; 2019 Oct; 35(19):3826-3828. PubMed ID: 30799504
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CHAPAO: Likelihood and hierarchical reference-based representation of biomolecular sequences and applications to compressing multiple sequence alignments.
    Rahman MA; Tutul AA; Abdullah SM; Bayzid MS
    PLoS One; 2022; 17(4):e0265360. PubMed ID: 35436292
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Compression and fast retrieval of SNP data.
    Sambo F; Di Camillo B; Toffolo G; Cobelli C
    Bioinformatics; 2014 Nov; 30(21):3078-85. PubMed ID: 25064564
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MAFCO: a compression tool for MAF files.
    Matos LM; Neves AJ; Pratas D; Pinho AJ
    PLoS One; 2015; 10(3):e0116082. PubMed ID: 25816229
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient sequencing data compression and FPGA acceleration based on a two-step framework.
    Chen S; Chen Y; Wang Z; Qin W; Zhang J; Nand H; Zhang J; Li J; Zhang X; Liang X; Xu M
    Front Genet; 2023; 14():1260531. PubMed ID: 37811144
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BIND - an algorithm for loss-less compression of nucleotide sequence data.
    Bose T; Mohammed MH; Dutta A; Mande SS
    J Biosci; 2012 Sep; 37(4):785-9. PubMed ID: 22922203
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DELIMINATE--a fast and efficient method for loss-less compression of genomic sequences: sequence analysis.
    Mohammed MH; Dutta A; Bose T; Chadaram S; Mande SS
    Bioinformatics; 2012 Oct; 28(19):2527-9. PubMed ID: 22833526
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data.
    Buchanan CC; Torstenson ES; Bush WS; Ritchie MD
    J Am Med Inform Assoc; 2012; 19(2):289-94. PubMed ID: 22319179
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CSAM: Compressed SAM format.
    Cánovas R; Moffat A; Turpin A
    Bioinformatics; 2016 Dec; 32(24):3709-3716. PubMed ID: 27540265
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Retrieving HapMap Data via Bulk Download.
    Smith AV
    CSH Protoc; 2008 Jul; 2008():pdb.prot5027. PubMed ID: 21356871
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluating coverage of exons by HapMap SNPs.
    Dong X; Zhong T; Xu T; Xia Y; Li B; Li C; Yuan L; Ding G; Li Y
    Genomics; 2013 Jan; 101(1):20-3. PubMed ID: 23000193
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AQUa: an adaptive framework for compression of sequencing quality scores with random access functionality.
    Paridaens T; Van Wallendael G; De Neve W; Lambert P
    Bioinformatics; 2018 Feb; 34(3):425-433. PubMed ID: 29028894
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Manipulating HapMap Data Using HaploView.
    Smith AV
    CSH Protoc; 2008 Jul; 2008():pdb.prot5025. PubMed ID: 21356869
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of variation in frequency for SNPs associated with asthma or liver disease between Estonia, HapMap populations and the 1000 genome project populations.
    Reisberg S; Galwey N; Avillach P; Sahlqvist AS; Kolberg L; Mägi R; Esko T; Vilo J; James G
    Int J Immunogenet; 2019 Apr; 46(2):49-58. PubMed ID: 30659741
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Navigating the HapMap.
    Barnes MR
    Brief Bioinform; 2006 Sep; 7(3):211-24. PubMed ID: 16877472
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tag SNP selection for Finnish individuals based on the CEPH Utah HapMap database.
    Willer CJ; Scott LJ; Bonnycastle LL; Jackson AU; Chines P; Pruim R; Bark CW; Tsai YY; Pugh EW; Doheny KF; Kinnunen L; Mohlke KL; Valle TT; Bergman RN; Tuomilehto J; Collins FS; Boehnke M
    Genet Epidemiol; 2006 Feb; 30(2):180-90. PubMed ID: 16374835
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MFCompress: a compression tool for FASTA and multi-FASTA data.
    Pinho AJ; Pratas D
    Bioinformatics; 2014 Jan; 30(1):117-8. PubMed ID: 24132931
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Comparison of minor allele frequencies and haplotype frequencies for single nucleotide polymorphisms in ROR2 gene using HapMap data for Chinese Hans in Beijing and Yoruban in Ibadan in Nigeria].
    Wang H; Zhao KP
    Beijing Da Xue Xue Bao Yi Xue Ban; 2011 Dec; 43(6):785-91. PubMed ID: 22178821
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.