BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 22844102)

  • 1. Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data.
    Sievers C; Schlumpf T; Sawarkar R; Comoglio F; Paro R
    Nucleic Acids Res; 2012 Nov; 40(20):e160. PubMed ID: 22844102
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.
    Comoglio F; Sievers C; Paro R
    BMC Bioinformatics; 2015 Feb; 16():32. PubMed ID: 25638391
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
    Maatz H; Kolinski M; Hubner N; Landthaler M
    Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
    Benhalevy D; McFarland HL; Sarshad AA; Hafner M
    Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
    Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
    Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.
    Yun J; Wang T; Xiao G
    Biometrics; 2014 Jun; 70(2):430-40. PubMed ID: 24571656
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
    Anisimova AS; Karagöz GE
    RNA; 2023 Nov; 29(11):1818-1836. PubMed ID: 37582618
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
    Spitzer J; Hafner M; Landthaler M; Ascano M; Farazi T; Wardle G; Nusbaum J; Khorshid M; Burger L; Zavolan M; Tuschl T
    Methods Enzymol; 2014; 539():113-61. PubMed ID: 24581442
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational analysis of CLIP-seq data.
    Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
    Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PAR-CLIP Assay in Ferroptosis.
    Xue X; Wang M; Zhang X; Ma L; Wang J
    Methods Mol Biol; 2023; 2712():29-43. PubMed ID: 37578694
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MOV10 Is a 5' to 3' RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3' UTRs.
    Gregersen LH; Schueler M; Munschauer M; Mastrobuoni G; Chen W; Kempa S; Dieterich C; Landthaler M
    Mol Cell; 2014 May; 54(4):573-85. PubMed ID: 24726324
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A model-based approach to identify binding sites in CLIP-Seq data.
    Wang T; Chen B; Kim M; Xie Y; Xiao G
    PLoS One; 2014; 9(4):e93248. PubMed ID: 24714572
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BayMAP: a Bayesian hierarchical model for the analysis of PAR-CLIP data.
    Huessler EM; Schäfer M; Schwender H; Landgraf P
    Bioinformatics; 2019 Jun; 35(12):1992-2000. PubMed ID: 30418480
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.
    Chou CH; Lin FM; Chou MT; Hsu SD; Chang TH; Weng SL; Shrestha S; Hsiao CC; Hung JH; Huang HD
    BMC Genomics; 2013; 14 Suppl 1(Suppl 1):S2. PubMed ID: 23368412
    [TBL] [Abstract][Full Text] [Related]  

  • 20. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
    Drewe-Boss P; Wessels HH; Ohler U
    Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.