BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 22848493)

  • 1. qPMS7: a fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences.
    Dinh H; Rajasekaran S; Davila J
    PLoS One; 2012; 7(7):e41425. PubMed ID: 22848493
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem.
    Dinh H; Rajasekaran S; Kundeti VK
    BMC Bioinformatics; 2011 Oct; 12():410. PubMed ID: 22024209
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient sequential and parallel algorithms for planted motif search.
    Nicolae M; Rajasekaran S
    BMC Bioinformatics; 2014 Jan; 15():34. PubMed ID: 24479443
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A speedup technique for (l, d)-motif finding algorithms.
    Rajasekaran S; Dinh H
    BMC Res Notes; 2011 Mar; 4():54. PubMed ID: 21385438
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PMS: a panoptic motif search tool.
    Dinh H; Rajasekaran S
    PLoS One; 2013; 8(12):e80660. PubMed ID: 24324619
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient sequential and parallel algorithms for finding edit distance based motifs.
    Pal S; Xiao P; Rajasekaran S
    BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):465. PubMed ID: 27557423
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved Exact Enumerative Algorithms for the Planted (l, d)-Motif Search Problem.
    Tanaka S
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):361-74. PubMed ID: 26355783
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.
    Yu Q; Wei D; Huo H
    BMC Bioinformatics; 2018 Jun; 19(1):228. PubMed ID: 29914360
    [TBL] [Abstract][Full Text] [Related]  

  • 9. qPMS9: an efficient algorithm for quorum Planted Motif Search.
    Nicolae M; Rajasekaran S
    Sci Rep; 2015 Jan; 5():7813. PubMed ID: 25589474
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Efficient algorithms for biological stems search.
    Mi T; Rajasekaran S
    BMC Bioinformatics; 2013 May; 14():161. PubMed ID: 23679045
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Discovering Motifs in Biological Sequences Using the Micron Automata Processor.
    Roy I; Aluru S
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(1):99-111. PubMed ID: 26886735
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
    Yu Q; Huo H; Vitter JS; Huan J; Nekrich Y
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):384-97. PubMed ID: 26357225
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RefSelect: a reference sequence selection algorithm for planted (l, d) motif search.
    Yu Q; Huo H; Zhao R; Feng D; Vitter JS; Huan J
    BMC Bioinformatics; 2016 Jul; 17 Suppl 9(Suppl 9):266. PubMed ID: 27454113
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A fast weak motif-finding algorithm based on community detection in graphs.
    Jia C; Carson MB; Yu J
    BMC Bioinformatics; 2013 Jul; 14():227. PubMed ID: 23865838
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EMS3: An Improved Algorithm for Finding Edit-Distance Based Motifs.
    Xiao P; Cai X; Rajasekaran S
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):27-37. PubMed ID: 32931433
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Efficient motif finding algorithms for large-alphabet inputs.
    Kuksa PP; Pavlovic V
    BMC Bioinformatics; 2010 Oct; 11 Suppl 8(Suppl 8):S1. PubMed ID: 21034426
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PairMotif: A new pattern-driven algorithm for planted (l, d) DNA motif search.
    Yu Q; Huo H; Zhang Y; Guo H
    PLoS One; 2012; 7(10):e48442. PubMed ID: 23119020
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A cluster refinement algorithm for motif discovery.
    Li G; Chan TM; Leung KS; Lee KH
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):654-68. PubMed ID: 21030733
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
    Le T; Altman T; Gardiner K
    Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.
    Seitzer P; Wilbanks EG; Larsen DJ; Facciotti MT
    BMC Bioinformatics; 2012 Nov; 13():317. PubMed ID: 23181585
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.