176 related articles for article (PubMed ID: 22859749)
1. Assessment of community-submitted ontology annotations from a novel database-journal partnership.
Berardini TZ; Li D; Muller R; Chetty R; Ploetz L; Singh S; Wensel A; Huala E
Database (Oxford); 2012; 2012():bas030. PubMed ID: 22859749
[TBL] [Abstract][Full Text] [Related]
2. Standardized description of scientific evidence using the Evidence Ontology (ECO).
Chibucos MC; Mungall CJ; Balakrishnan R; Christie KR; Huntley RP; White O; Blake JA; Lewis SE; Giglio M
Database (Oxford); 2014; 2014():. PubMed ID: 25052702
[TBL] [Abstract][Full Text] [Related]
3. Quality of computationally inferred gene ontology annotations.
Skunca N; Altenhoff A; Dessimoz C
PLoS Comput Biol; 2012 May; 8(5):e1002533. PubMed ID: 22693439
[TBL] [Abstract][Full Text] [Related]
4. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Park J; Costanzo MC; Balakrishnan R; Cherry JM; Hong EL
Database (Oxford); 2012; 2012():bas001. PubMed ID: 22434836
[TBL] [Abstract][Full Text] [Related]
5. Building an efficient curation workflow for the Arabidopsis literature corpus.
Li D; Berardini TZ; Muller RJ; Huala E
Database (Oxford); 2012; 2012():bas047. PubMed ID: 23221298
[TBL] [Abstract][Full Text] [Related]
6. Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
Costanzo MC; Park J; Balakrishnan R; Cherry JM; Hong EL
Database (Oxford); 2011; 2011():bar004. PubMed ID: 21411447
[TBL] [Abstract][Full Text] [Related]
7. Cross-organism learning method to discover new gene functionalities.
Domeniconi G; Masseroli M; Moro G; Pinoli P
Comput Methods Programs Biomed; 2016 Apr; 126():20-34. PubMed ID: 26724853
[TBL] [Abstract][Full Text] [Related]
8. Gene Ontology annotations at SGD: new data sources and annotation methods.
Hong EL; Balakrishnan R; Dong Q; Christie KR; Park J; Binkley G; Costanzo MC; Dwight SS; Engel SR; Fisk DG; Hirschman JE; Hitz BC; Krieger CJ; Livstone MS; Miyasato SR; Nash RS; Oughtred R; Skrzypek MS; Weng S; Wong ED; Zhu KK; Dolinski K; Botstein D; Cherry JM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D577-81. PubMed ID: 17982175
[TBL] [Abstract][Full Text] [Related]
9. miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.
Liu H; Jin T; Liao R; Wan L; Xu B; Zhou S; Guan J
BMC Plant Biol; 2012 May; 12():68. PubMed ID: 22583976
[TBL] [Abstract][Full Text] [Related]
10. Gene Ontology annotations and resources.
; Blake JA; Dolan M; Drabkin H; Hill DP; Li N; Sitnikov D; Bridges S; Burgess S; Buza T; McCarthy F; Peddinti D; Pillai L; Carbon S; Dietze H; Ireland A; Lewis SE; Mungall CJ; Gaudet P; Chrisholm RL; Fey P; Kibbe WA; Basu S; Siegele DA; McIntosh BK; Renfro DP; Zweifel AE; Hu JC; Brown NH; Tweedie S; Alam-Faruque Y; Apweiler R; Auchinchloss A; Axelsen K; Bely B; Blatter M-; Bonilla C; Bouguerleret L; Boutet E; Breuza L; Bridge A; Chan WM; Chavali G; Coudert E; Dimmer E; Estreicher A; Famiglietti L; Feuermann M; Gos A; Gruaz-Gumowski N; Hieta R; Hinz C; Hulo C; Huntley R; James J; Jungo F; Keller G; Laiho K; Legge D; Lemercier P; Lieberherr D; Magrane M; Martin MJ; Masson P; Mutowo-Muellenet P; O'Donovan C; Pedruzzi I; Pichler K; Poggioli D; Porras Millán P; Poux S; Rivoire C; Roechert B; Sawford T; Schneider M; Stutz A; Sundaram S; Tognolli M; Xenarios I; Foulgar R; Lomax J; Roncaglia P; Khodiyar VK; Lovering RC; Talmud PJ; Chibucos M; Giglio MG; Chang H-; Hunter S; McAnulla C; Mitchell A; Sangrador A; Stephan R; Harris MA; Oliver SG; Rutherford K; Wood V; Bahler J; Lock A; Kersey PJ; McDowall DM; Staines DM; Dwinell M; Shimoyama M; Laulederkind S; Hayman T; Wang S-; Petri V; Lowry T; D'Eustachio P; Matthews L; Balakrishnan R; Binkley G; Cherry JM; Costanzo MC; Dwight SS; Engel SR; Fisk DG; Hitz BC; Hong EL; Karra K; Miyasato SR; Nash RS; Park J; Skrzypek MS; Weng S; Wong ED; Berardini TZ; Huala E; Mi H; Thomas PD; Chan J; Kishore R; Sternberg P; Van Auken K; Howe D; Westerfield M
Nucleic Acids Res; 2013 Jan; 41(Database issue):D530-5. PubMed ID: 23161678
[TBL] [Abstract][Full Text] [Related]
11. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Camon E; Magrane M; Barrell D; Lee V; Dimmer E; Maslen J; Binns D; Harte N; Lopez R; Apweiler R
Nucleic Acids Res; 2004 Jan; 32(Database issue):D262-6. PubMed ID: 14681408
[TBL] [Abstract][Full Text] [Related]
12. The Arabidopsis Information Resource in 2024.
Reiser L; Bakker E; Subramaniam S; Chen X; Sawant S; Khosa K; Prithvi T; Berardini TZ
Genetics; 2024 May; 227(1):. PubMed ID: 38457127
[TBL] [Abstract][Full Text] [Related]
13. The Gene Ontology resource: enriching a GOld mine.
Gene Ontology Consortium
Nucleic Acids Res; 2021 Jan; 49(D1):D325-D334. PubMed ID: 33290552
[TBL] [Abstract][Full Text] [Related]
14. Gene Ontology annotations: what they mean and where they come from.
Hill DP; Smith B; McAndrews-Hill MS; Blake JA
BMC Bioinformatics; 2008 Apr; 9 Suppl 5(Suppl 5):S2. PubMed ID: 18460184
[TBL] [Abstract][Full Text] [Related]
15. Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
Zaremba S; Ramos-Santacruz M; Hampton T; Shetty P; Fedorko J; Whitmore J; Greene JM; Perna NT; Glasner JD; Plunkett G; Shaker M; Pot D
BMC Bioinformatics; 2009 Jun; 10():177. PubMed ID: 19515247
[TBL] [Abstract][Full Text] [Related]
16. PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.
Yoo D; Xu I; Berardini TZ; Rhee SY; Narayanasamy V; Twigger S
Curr Protoc Bioinformatics; 2006 Mar; Chapter 9():Unit9.7. PubMed ID: 18428773
[TBL] [Abstract][Full Text] [Related]
17. Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database.
Drabkin HJ; Blake JA;
Database (Oxford); 2012; 2012():bas045. PubMed ID: 23110975
[TBL] [Abstract][Full Text] [Related]
18. The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.
Chibucos MC; Siegele DA; Hu JC; Giglio M
Methods Mol Biol; 2017; 1446():245-259. PubMed ID: 27812948
[TBL] [Abstract][Full Text] [Related]
19. OnEX: Exploring changes in life science ontologies.
Hartung M; Kirsten T; Gross A; Rahm E
BMC Bioinformatics; 2009 Aug; 10():250. PubMed ID: 19678926
[TBL] [Abstract][Full Text] [Related]
20. Evaluating Computational Gene Ontology Annotations.
Škunca N; Roberts RJ; Steffen M
Methods Mol Biol; 2017; 1446():97-109. PubMed ID: 27812938
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]