157 related articles for article (PubMed ID: 22870857)
1. Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing.
Johnson MD; Mueller M; Game L; Aitman TJ
Curr Protoc Mol Biol; 2012 Jul; Chapter 21():Unit21.23. PubMed ID: 22870857
[TBL] [Abstract][Full Text] [Related]
2. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
[TBL] [Abstract][Full Text] [Related]
3. Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.
Dinh HQ; Dubin M; Sedlazeck FJ; Lettner N; Mittelsten Scheid O; von Haeseler A
PLoS One; 2012; 7(7):e41528. PubMed ID: 22911809
[TBL] [Abstract][Full Text] [Related]
4. Analysis of DNA methylation in plants by bisulfite sequencing.
Foerster AM; Mittelsten Scheid O
Methods Mol Biol; 2010; 631():1-11. PubMed ID: 20204863
[TBL] [Abstract][Full Text] [Related]
5. BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.
Harris EY; Ponts N; Le Roch KG; Lonardi S
Bioinformatics; 2012 Jul; 28(13):1795-6. PubMed ID: 22563065
[TBL] [Abstract][Full Text] [Related]
6. Bisulfite pyrosequencing.
Bassil CF; Huang Z; Murphy SK
Methods Mol Biol; 2013; 1049():95-107. PubMed ID: 23913212
[TBL] [Abstract][Full Text] [Related]
7. Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.
Varley KE; Mitra RD
Genome Res; 2010 Sep; 20(9):1279-87. PubMed ID: 20627893
[TBL] [Abstract][Full Text] [Related]
8. Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution.
Garrett-Bakelman FE; Sheridan CK; Kacmarczyk TJ; Ishii J; Betel D; Alonso A; Mason CE; Figueroa ME; Melnick AM
J Vis Exp; 2015 Feb; (96):e52246. PubMed ID: 25742437
[TBL] [Abstract][Full Text] [Related]
9. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
Sun S; Noviski A; Yu X
BMC Bioinformatics; 2013 Aug; 14():259. PubMed ID: 23968174
[TBL] [Abstract][Full Text] [Related]
10. BSMAP: whole genome bisulfite sequence MAPping program.
Xi Y; Li W
BMC Bioinformatics; 2009 Jul; 10():232. PubMed ID: 19635165
[TBL] [Abstract][Full Text] [Related]
11. Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.
Adey A; Shendure J
Genome Res; 2012 Jun; 22(6):1139-43. PubMed ID: 22466172
[TBL] [Abstract][Full Text] [Related]
12. MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.
Pardo CE; Carr IM; Hoffman CJ; Darst RP; Markham AF; Bonthron DT; Kladde MP
Nucleic Acids Res; 2011 Jan; 39(1):e5. PubMed ID: 20959287
[TBL] [Abstract][Full Text] [Related]
13. Analysis of bisulfite sequencing data from plant DNA using CyMATE.
Foerster AM; Hetzl J; Müllner C; Mittelsten Scheid O
Methods Mol Biol; 2010; 631():13-22. PubMed ID: 20204864
[TBL] [Abstract][Full Text] [Related]
14. High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation.
Shiraishi M; Hayatsu H
DNA Res; 2004 Dec; 11(6):409-15. PubMed ID: 15871463
[TBL] [Abstract][Full Text] [Related]
15. Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.
Gu H; Smith ZD; Bock C; Boyle P; Gnirke A; Meissner A
Nat Protoc; 2011 Apr; 6(4):468-81. PubMed ID: 21412275
[TBL] [Abstract][Full Text] [Related]
16. Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
Jiang P; Sun K; Lun FM; Guo AM; Wang H; Chan KC; Chiu RW; Lo YM; Sun H
PLoS One; 2014; 9(6):e100360. PubMed ID: 24945300
[TBL] [Abstract][Full Text] [Related]
17. GPU-BSM: a GPU-based tool to map bisulfite-treated reads.
Manconi A; Orro A; Manca E; Armano G; Milanesi L
PLoS One; 2014; 9(5):e97277. PubMed ID: 24842718
[TBL] [Abstract][Full Text] [Related]
18. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Cokus SJ; Feng S; Zhang X; Chen Z; Merriman B; Haudenschild CD; Pradhan S; Nelson SF; Pellegrini M; Jacobsen SE
Nature; 2008 Mar; 452(7184):215-9. PubMed ID: 18278030
[TBL] [Abstract][Full Text] [Related]
19. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
Pabinger S; Ernst K; Pulverer W; Kallmeyer R; Valdes AM; Metrustry S; Katic D; Nuzzo A; Kriegner A; Vierlinger K; Weinhaeusel A
PLoS One; 2016; 11(7):e0160227. PubMed ID: 27467908
[TBL] [Abstract][Full Text] [Related]
20. Standard DNA methylation analysis in mouse epidermis: bisulfite sequencing, methylation-specific PCR, and 5-methyl-cytosine (5mC) immunological detection.
Espada J; Carrasco E; Calvo MI
Methods Mol Biol; 2014; 1094():221-31. PubMed ID: 24162991
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
