These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

211 related articles for article (PubMed ID: 22886372)

  • 21. GalaxyDock: protein-ligand docking with flexible protein side-chains.
    Shin WH; Seok C
    J Chem Inf Model; 2012 Dec; 52(12):3225-32. PubMed ID: 23198780
    [TBL] [Abstract][Full Text] [Related]  

  • 22. DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.
    Antes I
    Proteins; 2010 Apr; 78(5):1084-104. PubMed ID: 20017216
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Systematic and efficient side chain optimization for molecular docking using a cheapest-path procedure.
    Schumann M; Armen RS
    J Comput Chem; 2013 May; 34(14):1258-69. PubMed ID: 23420703
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Flexible docking allowing induced fit in proteins: insights from an open to closed conformational isomers.
    Sandak B; Wolfson HJ; Nussinov R
    Proteins; 1998 Aug; 32(2):159-74. PubMed ID: 9714156
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY; Zou X
    Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Accounting for global protein deformability during protein-protein and protein-ligand docking.
    May A; Zacharias M
    Biochim Biophys Acta; 2005 Dec; 1754(1-2):225-31. PubMed ID: 16214429
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Numerical errors and chaotic behavior in docking simulations.
    Feher M; Williams CI
    J Chem Inf Model; 2012 Mar; 52(3):724-38. PubMed ID: 22379951
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
    Kämper A; Apostolakis J; Rarey M; Marian CM; Lengauer T
    J Chem Inf Model; 2006; 46(2):903-11. PubMed ID: 16563022
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
    Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L
    Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Rapid protein-ligand docking using soft modes from molecular dynamics simulations to account for protein deformability: binding of FK506 to FKBP.
    Zacharias M
    Proteins; 2004 Mar; 54(4):759-67. PubMed ID: 14997571
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Accounting for conformational variability in protein-ligand docking with NMR-guided rescoring.
    Skjærven L; Codutti L; Angelini A; Grimaldi M; Latek D; Monecke P; Dreyer MK; Carlomagno T
    J Am Chem Soc; 2013 Apr; 135(15):5819-27. PubMed ID: 23565800
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Docking of ATP to Ca-ATPase: considering protein domain motions.
    Pyrkov TV; Kosinsky YA; Arseniev AS; Priestle JP; Jacoby E; Efremov RG
    J Chem Inf Model; 2007; 47(3):1171-81. PubMed ID: 17489554
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Accounting for loop flexibility during protein-protein docking.
    Bastard K; Prévost C; Zacharias M
    Proteins; 2006 Mar; 62(4):956-69. PubMed ID: 16372349
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Modeling correlated main-chain motions in proteins for flexible molecular recognition.
    Zavodszky MI; Lei M; Thorpe MF; Day AR; Kuhn LA
    Proteins; 2004 Nov; 57(2):243-61. PubMed ID: 15340912
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Exploring hierarchical refinement techniques for induced fit docking with protein and ligand flexibility.
    Borrelli KW; Cossins B; Guallar V
    J Comput Chem; 2010 Apr; 31(6):1224-35. PubMed ID: 19885871
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Receptor flexibility in de novo ligand design and docking.
    Alberts IL; Todorov NP; Dean PM
    J Med Chem; 2005 Oct; 48(21):6585-96. PubMed ID: 16220975
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Conformational selection in silico: loop latching motions and ligand binding in enzymes.
    Wong S; Jacobson MP
    Proteins; 2008 Apr; 71(1):153-64. PubMed ID: 17932934
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The impact of protein flexibility on protein-protein docking.
    Ehrlich LP; Nilges M; Wade RC
    Proteins; 2005 Jan; 58(1):126-33. PubMed ID: 15515181
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Exploring c-Met kinase flexibility by sampling and clustering its conformational space.
    Asses Y; Venkatraman V; Leroux V; Ritchie DW; Maigret B
    Proteins; 2012 Apr; 80(4):1227-38. PubMed ID: 22275094
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.