BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

253 related articles for article (PubMed ID: 22888092)

  • 1. Analysis of low complex region peptides derived from mollusk shell matrix proteins using CID, high-energy collisional dissociation, and electron transfer dissociation on an LTQ-orbitrap: implications for peptide to spectrum match.
    Marie A; Alves S; Marie B; Dubost L; Bédouet L; Berland S
    Proteomics; 2012 Oct; 12(19-20):3069-75. PubMed ID: 22888092
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.
    Sun RX; Dong MQ; Song CQ; Chi H; Yang B; Xiu LY; Tao L; Jing ZY; Liu C; Wang LH; Fu Y; He SM
    J Proteome Res; 2010 Dec; 9(12):6354-67. PubMed ID: 20883037
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.
    Frese CK; Altelaar AF; Hennrich ML; Nolting D; Zeller M; Griep-Raming J; Heck AJ; Mohammed S
    J Proteome Res; 2011 May; 10(5):2377-88. PubMed ID: 21413819
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Higher energy collision dissociation (HCD) product ion-triggered electron transfer dissociation (ETD) mass spectrometry for the analysis of N-linked glycoproteins.
    Singh C; Zampronio CG; Creese AJ; Cooper HJ
    J Proteome Res; 2012 Sep; 11(9):4517-25. PubMed ID: 22800195
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.
    Nanni P; Panse C; Gehrig P; Mueller S; Grossmann J; Schlapbach R
    Proteomics; 2013 Aug; 13(15):2251-5. PubMed ID: 23713006
    [TBL] [Abstract][Full Text] [Related]  

  • 6. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
    Chi H; Chen H; He K; Wu L; Yang B; Sun RX; Liu J; Zeng WF; Song CQ; He SM; Dong MQ
    J Proteome Res; 2013 Feb; 12(2):615-25. PubMed ID: 23272783
    [TBL] [Abstract][Full Text] [Related]  

  • 7. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
    J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).
    Samgina TY; Vorontsov EA; Gorshkov VA; Artemenko KA; Zubarev RA; Lebedev AT
    Rapid Commun Mass Spectrom; 2014 Dec; 28(23):2595-604. PubMed ID: 25366406
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.
    de Graaf EL; Altelaar AF; van Breukelen B; Mohammed S; Heck AJ
    J Proteome Res; 2011 Sep; 10(9):4334-41. PubMed ID: 21726076
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
    Shen Y; Tolić N; Xie F; Zhao R; Purvine SO; Schepmoes AA; Moore RJ; Anderson GA; Smith RD
    J Proteome Res; 2011 Sep; 10(9):3929-43. PubMed ID: 21678914
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Gaining efficiency by parallel quantification and identification of iTRAQ-labeled peptides using HCD and decision tree guided CID/ETD on an LTQ Orbitrap.
    Mischerikow N; van Nierop P; Li KW; Bernstein HG; Smit AB; Heck AJ; Altelaar AF
    Analyst; 2010 Oct; 135(10):2643-52. PubMed ID: 20714520
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A systematic investigation into the nature of tryptic HCD spectra.
    Michalski A; Neuhauser N; Cox J; Mann M
    J Proteome Res; 2012 Nov; 11(11):5479-91. PubMed ID: 22998608
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.
    Nagaraj N; D'Souza RC; Cox J; Olsen JV; Mann M
    J Proteome Res; 2010 Dec; 9(12):6786-94. PubMed ID: 20873877
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reduction in database search space by utilization of amino acid composition information from electron transfer dissociation and higher-energy collisional dissociation mass spectra.
    Hansen TA; Kryuchkov F; Kjeldsen F
    Anal Chem; 2012 Aug; 84(15):6638-45. PubMed ID: 22799558
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
    Kandasamy K; Pandey A; Molina H
    Anal Chem; 2009 Sep; 81(17):7170-80. PubMed ID: 19639959
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
    Vandenbogaert M; Hourdel V; Jardin-Mathé O; Bigeard J; Bonhomme L; Legros V; Hirt H; Schwikowski B; Pflieger D
    J Proteome Res; 2012 Dec; 11(12):5695-703. PubMed ID: 23094866
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Direct approach for qualitative and quantitative characterization of glycoproteins using tandem mass tags and an LTQ Orbitrap XL electron transfer dissociation hybrid mass spectrometer.
    Ye H; Boyne MT; Buhse LF; Hill J
    Anal Chem; 2013 Feb; 85(3):1531-9. PubMed ID: 23249142
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of CID, ETD and metastable atom-activated dissociation (MAD) of doubly and triply charged phosphorylated tau peptides.
    Cook SL; Zimmermann CM; Singer D; Fedorova M; Hoffmann R; Jackson GP
    J Mass Spectrom; 2012 Jun; 47(6):786-94. PubMed ID: 22707171
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Statistical characterization of HCD fragmentation patterns of tryptic peptides on an LTQ Orbitrap Velos mass spectrometer.
    Shao C; Zhang Y; Sun W
    J Proteomics; 2014 Sep; 109():26-37. PubMed ID: 24981973
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)
    Tsiatsiani L; Giansanti P; Scheltema RA; van den Toorn H; Overall CM; Altelaar AF; Heck AJ
    J Proteome Res; 2017 Feb; 16(2):852-861. PubMed ID: 28111955
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.