BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

381 related articles for article (PubMed ID: 22891638)

  • 1. Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data.
    Duan J; Xia C; Zhao G; Jia J; Kong X
    BMC Genomics; 2012 Aug; 13():392. PubMed ID: 22891638
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study.
    Zhao QY; Wang Y; Kong YM; Luo D; Li X; Hao P
    BMC Bioinformatics; 2011 Dec; 12 Suppl 14(Suppl 14):S2. PubMed ID: 22373417
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
    Yang Y; Smith SA
    BMC Genomics; 2013 May; 14():328. PubMed ID: 23672450
    [TBL] [Abstract][Full Text] [Related]  

  • 4. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads.
    Kerr SC; Gaiti F; Tanurdzic M
    Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.).
    Li HZ; Gao X; Li XY; Chen QJ; Dong J; Zhao WC
    PLoS One; 2013; 8(12):e83530. PubMed ID: 24349528
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparative performance of transcriptome assembly methods for non-model organisms.
    Huang X; Chen XG; Armbruster PA
    BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction.
    Jung H; Yoon BH; Kim WJ; Kim DW; Hurwood DA; Lyons RE; Salin KR; Kim HS; Baek I; Chand V; Mather PB
    Int J Mol Sci; 2016 May; 17(5):. PubMed ID: 27164098
    [TBL] [Abstract][Full Text] [Related]  

  • 9. De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.
    Hölzer M; Marz M
    Gigascience; 2019 May; 8(5):. PubMed ID: 31077315
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.
    Wang S; Gribskov M
    Bioinformatics; 2017 Feb; 33(3):327-333. PubMed ID: 28172640
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems.
    Tulin S; Aguiar D; Istrail S; Smith J
    Evodevo; 2013; 4():16. PubMed ID: 23731568
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird.
    Finseth FR; Harrison RG
    PLoS One; 2014; 9(10):e108550. PubMed ID: 25279728
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
    Mbandi SK; Hesse U; van Heusden P; Christoffels A
    BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
    [TBL] [Abstract][Full Text] [Related]  

  • 14. De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease.
    Marchant A; Mougel F; Almeida C; Jacquin-Joly E; Costa J; Harry M
    Genetica; 2015 Apr; 143(2):225-39. PubMed ID: 25233990
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA-Seq in Nonmodel Organisms.
    Chalifa-Caspi V
    Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis.
    Chow KS; Ghazali AK; Hoh CC; Mohd-Zainuddin Z
    BMC Res Notes; 2014 Feb; 7():69. PubMed ID: 24484543
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparative analysis of de novo transcriptome assembly.
    Clarke K; Yang Y; Marsh R; Xie L; Zhang KK
    Sci China Life Sci; 2013 Feb; 56(2):156-62. PubMed ID: 23393031
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat.
    Oono Y; Kobayashi F; Kawahara Y; Yazawa T; Handa H; Itoh T; Matsumoto T
    BMC Genomics; 2013 Feb; 14():77. PubMed ID: 23379779
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana.
    Nakasugi K; Crowhurst R; Bally J; Waterhouse P
    PLoS One; 2014; 9(3):e91776. PubMed ID: 24614631
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.
    Xie Y; Wu G; Tang J; Luo R; Patterson J; Liu S; Huang W; He G; Gu S; Li S; Zhou X; Lam TW; Li Y; Xu X; Wong GK; Wang J
    Bioinformatics; 2014 Jun; 30(12):1660-6. PubMed ID: 24532719
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.