These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

263 related articles for article (PubMed ID: 22902303)

  • 1. Codon substitution models based on residue similarity and their applications.
    Liu X; Liu H; Guo W; Yu K
    Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An empirical codon model for protein sequence evolution.
    Kosiol C; Holmes I; Goldman N
    Mol Biol Evol; 2007 Jul; 24(7):1464-79. PubMed ID: 17400572
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Relating physicochemical properties of amino acids to variable nucleotide substitution patterns among sites.
    Yang Z
    Pac Symp Biocomput; 2000; ():81-92. PubMed ID: 10902158
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    Goldman N; Yang Z
    Mol Biol Evol; 1994 Sep; 11(5):725-36. PubMed ID: 7968486
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Empirical codon substitution matrix.
    Schneider A; Cannarozzi GM; Gonnet GH
    BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins.
    Seo TK; Kishino H
    Syst Biol; 2008 Jun; 57(3):367-77. PubMed ID: 18570032
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein evolution with dependence among codons due to tertiary structure.
    Robinson DM; Jones DT; Kishino H; Goldman N; Thorne JL
    Mol Biol Evol; 2003 Oct; 20(10):1692-704. PubMed ID: 12885968
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The genetic code can cause systematic bias in simple phylogenetic models.
    Whelan S
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4003-11. PubMed ID: 18852102
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
    Bao L; Gu H; Dunn KA; Bielawski JP
    Mol Biol Evol; 2008 Sep; 25(9):1995-2007. PubMed ID: 18586695
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 11. New methods for detecting positive selection at single amino acid sites.
    Suzuki Y
    J Mol Evol; 2004 Jul; 59(1):11-9. PubMed ID: 15383903
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The generalization method of relationships among nucleotide sequences reveals an order in assimilation of amino acid codons during the isoacceptor tRNAs evolution.
    Chaley MB; Korotkov EV
    Pac Symp Biocomput; 1997; ():74-84. PubMed ID: 9390281
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A generalized mechanistic codon model.
    Zaheri M; Dib L; Salamin N
    Mol Biol Evol; 2014 Sep; 31(9):2528-41. PubMed ID: 24958740
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A combined empirical and mechanistic codon model.
    Doron-Faigenboim A; Pupko T
    Mol Biol Evol; 2007 Feb; 24(2):388-97. PubMed ID: 17110464
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation.
    Aris-Brosou S; Bielawski JP
    Gene; 2006 Aug; 378():58-64. PubMed ID: 16797879
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Testing for covarion-like evolution in protein sequences.
    Wang HC; Spencer M; Susko E; Roger AJ
    Mol Biol Evol; 2007 Jan; 24(1):294-305. PubMed ID: 17056642
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations.
    Goode M; Guindon S; Rodrigo A
    Genome Inform; 2008; 21():150-64. PubMed ID: 19425155
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions.
    Tzeng YH; Pan R; Li WH
    Mol Biol Evol; 2004 Dec; 21(12):2290-8. PubMed ID: 15329386
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving phylogenetic inference with a semiempirical amino acid substitution model.
    Zoller S; Schneider A
    Mol Biol Evol; 2013 Feb; 30(2):469-79. PubMed ID: 23002090
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Models of amino acid substitution and applications to mitochondrial protein evolution.
    Yang Z; Nielsen R; Hasegawa M
    Mol Biol Evol; 1998 Dec; 15(12):1600-11. PubMed ID: 9866196
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.