BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

399 related articles for article (PubMed ID: 22913592)

  • 1. Improving mapping and SNP-calling performance in multiplexed targeted next-generation sequencing.
    Elsharawy A; Forster M; Schracke N; Keller A; Thomsen I; Petersen BS; Stade B; Stähler P; Schreiber S; Rosenstiel P; Franke A
    BMC Genomics; 2012 Aug; 13():417. PubMed ID: 22913592
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 3. One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.
    Yuan S; Johnston HR; Zhang G; Li Y; Hu YJ; Qin ZS
    PLoS Comput Biol; 2015 Aug; 11(8):e1004448. PubMed ID: 26267278
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Impact of post-alignment processing in variant discovery from whole exome data.
    Tian S; Yan H; Kalmbach M; Slager SL
    BMC Bioinformatics; 2016 Oct; 17(1):403. PubMed ID: 27716037
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of variant calling tools for large plant genome re-sequencing.
    Yao Z; You FM; N'Diaye A; Knox RE; McCartney C; Hiebert CW; Pozniak C; Xu W
    BMC Bioinformatics; 2020 Aug; 21(1):360. PubMed ID: 32807073
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Variant callers for next-generation sequencing data: a comparison study.
    Liu X; Han S; Wang Z; Gelernter J; Yang BZ
    PLoS One; 2013; 8(9):e75619. PubMed ID: 24086590
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.
    Greminger MP; Stölting KN; Nater A; Goossens B; Arora N; Bruggmann R; Patrignani A; Nussberger B; Sharma R; Kraus RH; Ambu LN; Singleton I; Chikhi L; van Schaik CP; Krützen M
    BMC Genomics; 2014 Jan; 15():16. PubMed ID: 24405840
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.
    Trubetskoy V; Rodriguez A; Dave U; Campbell N; Crawford EL; Cook EH; Sutcliffe JS; Foster I; Madduri R; Cox NJ; Davis LK
    Bioinformatics; 2015 Jan; 31(2):187-93. PubMed ID: 25270638
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery.
    Barbitoff YA; Abasov R; Tvorogova VE; Glotov AS; Predeus AV
    BMC Genomics; 2022 Feb; 23(1):155. PubMed ID: 35193511
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels.
    Zanti M; Michailidou K; Loizidou MA; Machattou C; Pirpa P; Christodoulou K; Spyrou GM; Kyriacou K; Hadjisavvas A
    BMC Bioinformatics; 2021 Apr; 22(1):218. PubMed ID: 33910496
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SNP calling by sequencing pooled samples.
    Raineri E; Ferretti L; Esteve-Codina A; Nevado B; Heath S; Pérez-Enciso M
    BMC Bioinformatics; 2012 Sep; 13():239. PubMed ID: 22992255
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Archived neonatal dried blood spot samples can be used for accurate whole genome and exome-targeted next-generation sequencing.
    Hollegaard MV; Grauholm J; Nielsen R; Grove J; Mandrup S; Hougaard DM
    Mol Genet Metab; 2013; 110(1-2):65-72. PubMed ID: 23830478
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ComB: SNP calling and mapping analysis for color and nucleotide space platforms.
    Souaiaia T; Frazier Z; Chen T
    J Comput Biol; 2011 Jun; 18(6):795-807. PubMed ID: 21563978
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.
    Ramos E; Levinson BT; Chasnoff S; Hughes A; Young AL; Thornton K; Li A; Vallania FL; Province M; Druley TE
    BMC Genomics; 2012 Dec; 13():683. PubMed ID: 23216810
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens.
    Liu J; Shen Q; Bao H
    PLoS One; 2022; 17(1):e0262574. PubMed ID: 35100292
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Challenges in exome analysis by LifeScope and its alternative computational pipelines.
    Pranckevičiene E; Rančelis T; Pranculis A; Kučinskas V
    BMC Res Notes; 2015 Sep; 8():421. PubMed ID: 26346699
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences.
    Peng Z; Fan W; Wang L; Paudel D; Leventini D; Tillman BL; Wang J
    Mol Genet Genomics; 2017 Oct; 292(5):955-965. PubMed ID: 28492983
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Validation and assessment of variant calling pipelines for next-generation sequencing.
    Pirooznia M; Kramer M; Parla J; Goes FS; Potash JB; McCombie WR; Zandi PP
    Hum Genomics; 2014 Jul; 8(1):14. PubMed ID: 25078893
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications.
    Rimmer A; Phan H; Mathieson I; Iqbal Z; Twigg SRF; ; Wilkie AOM; McVean G; Lunter G
    Nat Genet; 2014 Aug; 46(8):912-918. PubMed ID: 25017105
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence.
    Blanca JM; Pascual L; Ziarsolo P; Nuez F; Cañizares J
    BMC Genomics; 2011 Jun; 12():285. PubMed ID: 21635747
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.