198 related articles for article (PubMed ID: 22947936)
1. Identification of minimally interacting modules in an intrinsically disordered protein.
Sethi A; Tian J; Vu DM; Gnanakaran S
Biophys J; 2012 Aug; 103(4):748-57. PubMed ID: 22947936
[TBL] [Abstract][Full Text] [Related]
2. A Coarse-Grained Molecular Dynamics Approach to the Study of the Intrinsically Disordered Protein α-Synuclein.
Ramis R; Ortega-Castro J; Casasnovas R; Mariño L; Vilanova B; Adrover M; Frau J
J Chem Inf Model; 2019 Apr; 59(4):1458-1471. PubMed ID: 30933517
[TBL] [Abstract][Full Text] [Related]
3. Epitope region identification challenges of intrinsically disordered proteins in neurodegenerative diseases: Secondary structure dependence of α-synuclein on simulation techniques and force field parameters.
Mandaci SY; Caliskan M; Sariaslan MF; Uversky VN; Coskuner-Weber O
Chem Biol Drug Des; 2020 Jul; 96(1):659-667. PubMed ID: 31903719
[TBL] [Abstract][Full Text] [Related]
4. Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations.
Pietrek LM; Stelzl LS; Hummer G
J Chem Theory Comput; 2020 Jan; 16(1):725-737. PubMed ID: 31809054
[TBL] [Abstract][Full Text] [Related]
5. Structures of the intrinsically disordered Aβ, tau and α-synuclein proteins in aqueous solution from computer simulations.
Nguyen PH; Derreumaux P
Biophys Chem; 2020 Sep; 264():106421. PubMed ID: 32623047
[TBL] [Abstract][Full Text] [Related]
6. Effects of pH on an IDP conformational ensemble explored by molecular dynamics simulation.
Lindsay RJ; Mansbach RA; Gnanakaran S; Shen T
Biophys Chem; 2021 Apr; 271():106552. PubMed ID: 33581430
[TBL] [Abstract][Full Text] [Related]
7. Intrinsic Conformational Preferences and Interactions in α-Synuclein Fibrils: Insights from Molecular Dynamics Simulations.
Ilie IM; Nayar D; den Otter WK; van der Vegt NFA; Briels WJ
J Chem Theory Comput; 2018 Jun; 14(6):3298-3310. PubMed ID: 29715424
[TBL] [Abstract][Full Text] [Related]
8. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
Cao Z; Liu L; Wu P; Wang J
Acta Biochim Biophys Sin (Shanghai); 2011 Mar; 43(3):172-80. PubMed ID: 21289072
[TBL] [Abstract][Full Text] [Related]
9. Molecular simulations of the fluctuating conformational dynamics of intrinsically disordered proteins.
Smith WW; Schreck CF; Hashem N; Soltani S; Nath A; Rhoades E; O'Hern CS
Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Oct; 86(4 Pt 1):041910. PubMed ID: 23214618
[TBL] [Abstract][Full Text] [Related]
10. Local and Global Dynamics in Intrinsically Disordered Synuclein.
Rezaei-Ghaleh N; Parigi G; Soranno A; Holla A; Becker S; Schuler B; Luchinat C; Zweckstetter M
Angew Chem Int Ed Engl; 2018 Nov; 57(46):15262-15266. PubMed ID: 30184304
[TBL] [Abstract][Full Text] [Related]
11. The structural heterogeneity of α-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds.
Chen J; Zaer S; Drori P; Zamel J; Joron K; Kalisman N; Lerner E; Dokholyan NV
Structure; 2021 Sep; 29(9):1048-1064.e6. PubMed ID: 34015255
[TBL] [Abstract][Full Text] [Related]
12. Conformational Biases of α-Synuclein and Formation of Transient Knots.
Chwastyk M; Cieplak M
J Phys Chem B; 2020 Jan; 124(1):11-19. PubMed ID: 31805238
[TBL] [Abstract][Full Text] [Related]
13. Conformational characteristics of unstructured peptides: alpha-synuclein.
Yoon J; Park J; Jang S; Lee K; Shin S
J Biomol Struct Dyn; 2008 Apr; 25(5):505-15. PubMed ID: 18282005
[TBL] [Abstract][Full Text] [Related]
14. Structures of the E46K mutant-type α-synuclein protein and impact of E46K mutation on the structures of the wild-type α-synuclein protein.
Wise-Scira O; Dunn A; Aloglu AK; Sakallioglu IT; Coskuner O
ACS Chem Neurosci; 2013 Mar; 4(3):498-508. PubMed ID: 23374074
[TBL] [Abstract][Full Text] [Related]
15. Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation.
Yu H; Han W; Ma W; Schulten K
J Chem Phys; 2015 Dec; 143(24):243142. PubMed ID: 26723627
[TBL] [Abstract][Full Text] [Related]
16. Molecular Dynamics-Assisted Interpretation of Experimentally Determined Intrinsically Disordered Protein Conformational Components: The Case of Human α-Synuclein.
Palomino-Hernandez O; Santambrogio C; Rossetti G; Fernandez CO; Grandori R; Carloni P
J Phys Chem B; 2022 May; 126(20):3632-3639. PubMed ID: 35543707
[TBL] [Abstract][Full Text] [Related]
17. Conformational Plasticity in α-Synuclein and How Crowded Environment Modulates It.
Menon S; Mondal J
J Phys Chem B; 2023 May; 127(18):4032-4049. PubMed ID: 37114769
[TBL] [Abstract][Full Text] [Related]
18. Predicting molecular properties of α-synuclein using force fields for intrinsically disordered proteins.
Pedersen KB; Flores-Canales JC; Schiøtt B
Proteins; 2023 Jan; 91(1):47-61. PubMed ID: 35950933
[TBL] [Abstract][Full Text] [Related]
19. Using Dimensionality Reduction to Systematically Expand Conformational Sampling of Intrinsically Disordered Peptides.
Kukharenko O; Sawade K; Steuer J; Peter C
J Chem Theory Comput; 2016 Oct; 12(10):4726-4734. PubMed ID: 27588692
[TBL] [Abstract][Full Text] [Related]
20. Using a FRET Library with Multiple Probe Pairs To Drive Monte Carlo Simulations of α-Synuclein.
Ferrie JJ; Haney CM; Yoon J; Pan B; Lin YC; Fakhraai Z; Rhoades E; Nath A; Petersson EJ
Biophys J; 2018 Jan; 114(1):53-64. PubMed ID: 29320696
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
