BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 22948921)

  • 1. Inhibition of D-xylose isomerase by polyols: atomic details by joint X-ray/neutron crystallography.
    Kovalevsky A; Hanson BL; Mason SA; Forsyth VT; Fisher Z; Mustyakimov M; Blakeley MP; Keen DA; Langan P
    Acta Crystallogr D Biol Crystallogr; 2012 Sep; 68(Pt 9):1201-6. PubMed ID: 22948921
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study.
    Kovalevsky AY; Hanson L; Fisher SZ; Mustyakimov M; Mason SA; Forsyth VT; Blakeley MP; Keen DA; Wagner T; Carrell HL; Katz AK; Glusker JP; Langan P
    Structure; 2010 Jun; 18(6):688-99. PubMed ID: 20541506
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose.
    Kovalevsky AY; Katz AK; Carrell HL; Hanson L; Mustyakimov M; Fisher SZ; Coates L; Schoenborn BP; Bunick GJ; Glusker JP; Langan P
    Biochemistry; 2008 Jul; 47(29):7595-7. PubMed ID: 18578508
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift.
    Fenn TD; Ringe D; Petsko GA
    Biochemistry; 2004 Jun; 43(21):6464-74. PubMed ID: 15157080
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively.
    Henrick K; Collyer CA; Blow DM
    J Mol Biol; 1989 Jul; 208(1):129-57. PubMed ID: 2769749
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A quasi-Laue neutron crystallographic study of D-xylose isomerase.
    Meilleur F; Snell EH; van der Woerd MJ; Judge RA; Myles DA
    Eur Biophys J; 2006 Sep; 35(7):601-9. PubMed ID: 16673077
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Room-Temperature Structure of Xylitol-Bound Glucose Isomerase by Serial Crystallography: Xylitol Binding in the M1 Site Induces Release of Metal Bound in the M2 Site.
    Nam KH
    Int J Mol Sci; 2021 Apr; 22(8):. PubMed ID: 33918749
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Engineering the substrate specificity of xylose isomerase.
    Karimäki J; Parkkinen T; Santa H; Pastinen O; Leisola M; Rouvinen J; Turunen O
    Protein Eng Des Sel; 2004 Dec; 17(12):861-9. PubMed ID: 15713782
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose.
    Whitlow M; Howard AJ; Finzel BC; Poulos TL; Winborne E; Gilliland GL
    Proteins; 1991; 9(3):153-73. PubMed ID: 2006134
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Locating active-site hydrogen atoms in D-xylose isomerase: time-of-flight neutron diffraction.
    Katz AK; Li X; Carrell HL; Hanson BL; Langan P; Coates L; Schoenborn BP; Glusker JP; Bunick GJ
    Proc Natl Acad Sci U S A; 2006 May; 103(22):8342-7. PubMed ID: 16707576
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Neutron structure of the cyclic glucose-bound xylose isomerase E186Q mutant.
    Munshi P; Snell EH; van der Woerd MJ; Judge RA; Myles DA; Ren Z; Meilleur F
    Acta Crystallogr D Biol Crystallogr; 2014 Feb; 70(Pt 2):414-20. PubMed ID: 24531475
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Binding energy and catalysis by D-xylose isomerase: kinetic, product, and X-ray crystallographic analysis of enzyme-catalyzed isomerization of (R)-glyceraldehyde.
    Toteva MM; Silvaggi NR; Allen KN; Richard JP
    Biochemistry; 2011 Nov; 50(46):10170-81. PubMed ID: 21995300
    [TBL] [Abstract][Full Text] [Related]  

  • 13. X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis.
    Lavie A; Allen KN; Petsko GA; Ringe D
    Biochemistry; 1994 May; 33(18):5469-80. PubMed ID: 8180169
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design.
    Waltman MJ; Yang ZK; Langan P; Graham DE; Kovalevsky A
    Protein Eng Des Sel; 2014 Feb; 27(2):59-64. PubMed ID: 24402330
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Role of the binuclear manganese(II) site in xylose isomerase.
    Bogumil R; Kappl R; Hüttermann J
    Met Ions Biol Syst; 2000; 37():365-405. PubMed ID: 10693140
    [No Abstract]   [Full Text] [Related]  

  • 16. Using neutron protein crystallography to understand enzyme mechanisms.
    Glusker JP; Carrell HL; Kovalevsky AY; Hanson L; Fisher SZ; Mustyakimov M; Mason S; Forsyth T; Langan P
    Acta Crystallogr D Biol Crystallogr; 2010 Nov; 66(Pt 11):1257-61. PubMed ID: 21041947
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Role of invariant water molecules and water-mediated ionic interactions in D-xylose isomerase from Streptomyces rubiginosus.
    Dhanasekaran V; Velmurugan D; Kanaujia SP; Sekar K
    J Biomol Struct Dyn; 2013 Apr; 31(4):376-84. PubMed ID: 22876874
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A preliminary time-of-flight neutron diffraction study of Streptomyces rubiginosus D-xylose isomerase.
    Hanson BL; Langan P; Katz AK; Li X; Harp JM; Glusker JP; Schoenborn BP; Bunick GJ
    Acta Crystallogr D Biol Crystallogr; 2004 Feb; 60(Pt 2):241-9. PubMed ID: 14747699
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Crystal structure of the metal-free state of glucose isomerase reveals its minimal open configuration for metal binding.
    Nam KH
    Biochem Biophys Res Commun; 2021 Apr; 547():69-74. PubMed ID: 33610042
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Crystal Structure and Functional Characterization of a Xylose Isomerase (PbXI) from the Psychrophilic Soil Microorganism, Paenibacillus sp.
    Park SH; Kwon S; Lee CW; Kim CM; Jeong CS; Kim KJ; Hong JW; Kim HJ; Park HH; Lee JH
    J Microbiol Biotechnol; 2019 Feb; 29(2):244-255. PubMed ID: 30602271
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.