752 related articles for article (PubMed ID: 22955618)
1. An expansive human regulatory lexicon encoded in transcription factor footprints.
Neph S; Vierstra J; Stergachis AB; Reynolds AP; Haugen E; Vernot B; Thurman RE; John S; Sandstrom R; Johnson AK; Maurano MT; Humbert R; Rynes E; Wang H; Vong S; Lee K; Bates D; Diegel M; Roach V; Dunn D; Neri J; Schafer A; Hansen RS; Kutyavin T; Giste E; Weaver M; Canfield T; Sabo P; Zhang M; Balasundaram G; Byron R; MacCoss MJ; Akey JM; Bender MA; Groudine M; Kaul R; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):83-90. PubMed ID: 22955618
[TBL] [Abstract][Full Text] [Related]
2. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
3. Global reference mapping of human transcription factor footprints.
Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
[TBL] [Abstract][Full Text] [Related]
4. An integrated encyclopedia of DNA elements in the human genome.
ENCODE Project Consortium
Nature; 2012 Sep; 489(7414):57-74. PubMed ID: 22955616
[TBL] [Abstract][Full Text] [Related]
5. Genomics: ENCODE explained.
Ecker JR; Bickmore WA; Barroso I; Pritchard JK; Gilad Y; Segal E
Nature; 2012 Sep; 489(7414):52-5. PubMed ID: 22955614
[No Abstract] [Full Text] [Related]
6. ENCODE: The human encyclopaedia.
Maher B
Nature; 2012 Sep; 489(7414):46-8. PubMed ID: 22962707
[No Abstract] [Full Text] [Related]
7. Architecture of the human regulatory network derived from ENCODE data.
Gerstein MB; Kundaje A; Hariharan M; Landt SG; Yan KK; Cheng C; Mu XJ; Khurana E; Rozowsky J; Alexander R; Min R; Alves P; Abyzov A; Addleman N; Bhardwaj N; Boyle AP; Cayting P; Charos A; Chen DZ; Cheng Y; Clarke D; Eastman C; Euskirchen G; Frietze S; Fu Y; Gertz J; Grubert F; Harmanci A; Jain P; Kasowski M; Lacroute P; Leng JJ; Lian J; Monahan H; O'Geen H; Ouyang Z; Partridge EC; Patacsil D; Pauli F; Raha D; Ramirez L; Reddy TE; Reed B; Shi M; Slifer T; Wang J; Wu L; Yang X; Yip KY; Zilberman-Schapira G; Batzoglou S; Sidow A; Farnham PJ; Myers RM; Weissman SM; Snyder M
Nature; 2012 Sep; 489(7414):91-100. PubMed ID: 22955619
[TBL] [Abstract][Full Text] [Related]
8. High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.
Boyle AP; Song L; Lee BK; London D; Keefe D; Birney E; Iyer VR; Crawford GE; Furey TS
Genome Res; 2011 Mar; 21(3):456-64. PubMed ID: 21106903
[TBL] [Abstract][Full Text] [Related]
9. Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.
Yardımcı GG; Frank CL; Crawford GE; Ohler U
Nucleic Acids Res; 2014 Oct; 42(19):11865-78. PubMed ID: 25294828
[TBL] [Abstract][Full Text] [Related]
10. Expanded encyclopaedias of DNA elements in the human and mouse genomes.
; Moore JE; Purcaro MJ; Pratt HE; Epstein CB; Shoresh N; Adrian J; Kawli T; Davis CA; Dobin A; Kaul R; Halow J; Van Nostrand EL; Freese P; Gorkin DU; Shen Y; He Y; Mackiewicz M; Pauli-Behn F; Williams BA; Mortazavi A; Keller CA; Zhang XO; Elhajjajy SI; Huey J; Dickel DE; Snetkova V; Wei X; Wang X; Rivera-Mulia JC; Rozowsky J; Zhang J; Chhetri SB; Zhang J; Victorsen A; White KP; Visel A; Yeo GW; Burge CB; Lécuyer E; Gilbert DM; Dekker J; Rinn J; Mendenhall EM; Ecker JR; Kellis M; Klein RJ; Noble WS; Kundaje A; Guigó R; Farnham PJ; Cherry JM; Myers RM; Ren B; Graveley BR; Gerstein MB; Pennacchio LA; Snyder MP; Bernstein BE; Wold B; Hardison RC; Gingeras TR; Stamatoyannopoulos JA; Weng Z
Nature; 2020 Jul; 583(7818):699-710. PubMed ID: 32728249
[TBL] [Abstract][Full Text] [Related]
11. Genomic approaches for the discovery of CFTR regulatory elements.
Ott CJ; Harris A
Transcription; 2011; 2(1):23-7. PubMed ID: 21326906
[TBL] [Abstract][Full Text] [Related]
12. Conservation of trans-acting circuitry during mammalian regulatory evolution.
Stergachis AB; Neph S; Sandstrom R; Haugen E; Reynolds AP; Zhang M; Byron R; Canfield T; Stelhing-Sun S; Lee K; Thurman RE; Vong S; Bates D; Neri F; Diegel M; Giste E; Dunn D; Vierstra J; Hansen RS; Johnson AK; Sabo PJ; Wilken MS; Reh TA; Treuting PM; Kaul R; Groudine M; Bender MA; Borenstein E; Stamatoyannopoulos JA
Nature; 2014 Nov; 515(7527):365-70. PubMed ID: 25409825
[TBL] [Abstract][Full Text] [Related]
13. In vivo footprinting studies suggest a role for chromatin in transcription of the human 7SK gene.
Boyd DC; Greger IH; Murphy S
Gene; 2000 Apr; 247(1-2):33-44. PubMed ID: 10773442
[TBL] [Abstract][Full Text] [Related]
14. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
Handel AE; Gallone G; Zameel Cader M; Ponting CP
Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
[TBL] [Abstract][Full Text] [Related]
15. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Hesselberth JR; Chen X; Zhang Z; Sabo PJ; Sandstrom R; Reynolds AP; Thurman RE; Neph S; Kuehn MS; Noble WS; Fields S; Stamatoyannopoulos JA
Nat Methods; 2009 Apr; 6(4):283-9. PubMed ID: 19305407
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide discovery of active regulatory elements and transcription factor footprints in
Ho MCW; Quintero-Cadena P; Sternberg PW
Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
[TBL] [Abstract][Full Text] [Related]
17. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
Moyano TC; Gutiérrez RA; Alvarez JM
Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
[TBL] [Abstract][Full Text] [Related]
18. Predicting cell-type-specific gene expression from regions of open chromatin.
Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
[TBL] [Abstract][Full Text] [Related]
19. Principles of regulatory information conservation between mouse and human.
Cheng Y; Ma Z; Kim BH; Wu W; Cayting P; Boyle AP; Sundaram V; Xing X; Dogan N; Li J; Euskirchen G; Lin S; Lin Y; Visel A; Kawli T; Yang X; Patacsil D; Keller CA; Giardine B; ; Kundaje A; Wang T; Pennacchio LA; Weng Z; Hardison RC; Snyder MP
Nature; 2014 Nov; 515(7527):371-375. PubMed ID: 25409826
[TBL] [Abstract][Full Text] [Related]
20. Index and biological spectrum of human DNase I hypersensitive sites.
Meuleman W; Muratov A; Rynes E; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Teodosiadis A; Reynolds A; Haugen E; Nelson J; Johnson A; Frerker M; Buckley M; Sandstrom R; Vierstra J; Kaul R; Stamatoyannopoulos J
Nature; 2020 Aug; 584(7820):244-251. PubMed ID: 32728217
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
