BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

449 related articles for article (PubMed ID: 22959076)

  • 1. Circuitry and dynamics of human transcription factor regulatory networks.
    Neph S; Stergachis AB; Reynolds A; Sandstrom R; Borenstein E; Stamatoyannopoulos JA
    Cell; 2012 Sep; 150(6):1274-86. PubMed ID: 22959076
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Construction and analysis of dynamic transcription factor regulatory networks in the progression of glioma.
    Li Y; Shao T; Jiang C; Bai J; Wang Z; Zhang J; Zhang L; Zhao Z; Xu J; Li X
    Sci Rep; 2015 Nov; 5():15953. PubMed ID: 26526635
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
    Sullivan AM; Arsovski AA; Lempe J; Bubb KL; Weirauch MT; Sabo PJ; Sandstrom R; Thurman RE; Neph S; Reynolds AP; Stergachis AB; Vernot B; Johnson AK; Haugen E; Sullivan ST; Thompson A; Neri FV; Weaver M; Diegel M; Mnaimneh S; Yang A; Hughes TR; Nemhauser JL; Queitsch C; Stamatoyannopoulos JA
    Cell Rep; 2014 Sep; 8(6):2015-2030. PubMed ID: 25220462
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Profiling the transcription factor regulatory networks of human cell types.
    Zhang S; Tian D; Tran NH; Choi KP; Zhang L
    Nucleic Acids Res; 2014 Nov; 42(20):12380-7. PubMed ID: 25300490
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting cell-type-specific gene expression from regions of open chromatin.
    Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
    Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
    Moyano TC; Gutiérrez RA; Alvarez JM
    Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Canonical and single-cell Hi-C reveal distinct chromatin interaction sub-networks of mammalian transcription factors.
    Ma X; Ezer D; Adryan B; Stevens TJ
    Genome Biol; 2018 Oct; 19(1):174. PubMed ID: 30359306
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Global reference mapping of human transcription factor footprints.
    Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
    Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Conservation of trans-acting circuitry during mammalian regulatory evolution.
    Stergachis AB; Neph S; Sandstrom R; Haugen E; Reynolds AP; Zhang M; Byron R; Canfield T; Stelhing-Sun S; Lee K; Thurman RE; Vong S; Bates D; Neri F; Diegel M; Giste E; Dunn D; Vierstra J; Hansen RS; Johnson AK; Sabo PJ; Wilken MS; Reh TA; Treuting PM; Kaul R; Groudine M; Bender MA; Borenstein E; Stamatoyannopoulos JA
    Nature; 2014 Nov; 515(7527):365-70. PubMed ID: 25409825
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Models of human core transcriptional regulatory circuitries.
    Saint-André V; Federation AJ; Lin CY; Abraham BJ; Reddy J; Lee TI; Bradner JE; Young RA
    Genome Res; 2016 Mar; 26(3):385-96. PubMed ID: 26843070
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
    Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors.
    Österlund T; Bordel S; Nielsen J
    Integr Biol (Camb); 2015 May; 7(5):560-8. PubMed ID: 25855217
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inter- and intra-combinatorial regulation by transcription factors and microRNAs.
    Zhou Y; Ferguson J; Chang JT; Kluger Y
    BMC Genomics; 2007 Oct; 8():396. PubMed ID: 17971223
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An extended transcription factor regulatory network controls hepatocyte identity.
    Dubois-Chevalier J; Gheeraert C; Berthier A; Boulet C; Dubois V; Guille L; Fourcot M; Marot G; Gauthier K; Dubuquoy L; Staels B; Lefebvre P; Eeckhoute J
    EMBO Rep; 2023 Sep; 24(9):e57020. PubMed ID: 37424431
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Systematic target function annotation of human transcription factors.
    Li YF; Altman RB
    BMC Biol; 2018 Jan; 16(1):4. PubMed ID: 29325558
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An atlas of combinatorial transcriptional regulation in mouse and man.
    Ravasi T; Suzuki H; Cannistraci CV; Katayama S; Bajic VB; Tan K; Akalin A; Schmeier S; Kanamori-Katayama M; Bertin N; Carninci P; Daub CO; Forrest AR; Gough J; Grimmond S; Han JH; Hashimoto T; Hide W; Hofmann O; Kamburov A; Kaur M; Kawaji H; Kubosaki A; Lassmann T; van Nimwegen E; MacPherson CR; Ogawa C; Radovanovic A; Schwartz A; Teasdale RD; Tegnér J; Lenhard B; Teichmann SA; Arakawa T; Ninomiya N; Murakami K; Tagami M; Fukuda S; Imamura K; Kai C; Ishihara R; Kitazume Y; Kawai J; Hume DA; Ideker T; Hayashizaki Y
    Cell; 2010 Mar; 140(5):744-52. PubMed ID: 20211142
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture.
    Jothi R; Balaji S; Wuster A; Grochow JA; Gsponer J; Przytycka TM; Aravind L; Babu MM
    Mol Syst Biol; 2009; 5():294. PubMed ID: 19690563
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Understanding Tissue-Specific Gene Regulation.
    Sonawane AR; Platig J; Fagny M; Chen CY; Paulson JN; Lopes-Ramos CM; DeMeo DL; Quackenbush J; Glass K; Kuijjer ML
    Cell Rep; 2017 Oct; 21(4):1077-1088. PubMed ID: 29069589
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Global and local architecture of the mammalian microRNA-transcription factor regulatory network.
    Shalgi R; Lieber D; Oren M; Pilpel Y
    PLoS Comput Biol; 2007 Jul; 3(7):e131. PubMed ID: 17630826
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The architecture of the gene regulatory networks of different tissues.
    Li J; Hua X; Haubrock M; Wang J; Wingender E
    Bioinformatics; 2012 Sep; 28(18):i509-i514. PubMed ID: 22962474
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.