BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

309 related articles for article (PubMed ID: 22965049)

  • 1. An accelerated workflow for untargeted metabolomics using the METLIN database.
    Tautenhahn R; Cho K; Uritboonthai W; Zhu Z; Patti GJ; Siuzdak G
    Nat Biotechnol; 2012 Sep; 30(9):826-8. PubMed ID: 22965049
    [No Abstract]   [Full Text] [Related]  

  • 2. METLIN: A Tandem Mass Spectral Library of Standards.
    Montenegro-Burke JR; Guijas C; Siuzdak G
    Methods Mol Biol; 2020; 2104():149-163. PubMed ID: 31953817
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Autonomous metabolomics for rapid metabolite identification in global profiling.
    Benton HP; Ivanisevic J; Mahieu NG; Kurczy ME; Johnson CH; Franco L; Rinehart D; Valentine E; Gowda H; Ubhi BK; Tautenhahn R; Gieschen A; Fields MW; Patti GJ; Siuzdak G
    Anal Chem; 2015 Jan; 87(2):884-91. PubMed ID: 25496351
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database.
    Zhu ZJ; Schultz AW; Wang J; Johnson CH; Yannone SM; Patti GJ; Siuzdak G
    Nat Protoc; 2013 Mar; 8(3):451-60. PubMed ID: 23391889
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of peak-picking workflows for untargeted liquid chromatography/high-resolution mass spectrometry metabolomics data analysis.
    Rafiei A; Sleno L
    Rapid Commun Mass Spectrom; 2015 Jan; 29(1):119-27. PubMed ID: 25462372
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics.
    Domingo-Almenara X; Montenegro-Burke JR; Guijas C; Majumder EL; Benton HP; Siuzdak G
    Anal Chem; 2019 Mar; 91(5):3246-3253. PubMed ID: 30681830
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Understanding the pathophysiological changes via untargeted metabolomics in COVID-19 patients.
    Doğan HO; Şenol O; Bolat S; Yıldız ŞN; Büyüktuna SA; Sarıismailoğlu R; Doğan K; Hasbek M; Hekim SN
    J Med Virol; 2021 Apr; 93(4):2340-2349. PubMed ID: 33300133
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Data Processing for GC-MS- and LC-MS-Based Untargeted Metabolomics.
    Yao L; Sheflin AM; Broeckling CD; Prenni JE
    Methods Mol Biol; 2019; 1978():287-299. PubMed ID: 31119670
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data.
    Wolthuis JC; Magnusdottir S; Pras-Raves M; Moshiri M; Jans JJM; Burgering B; van Mil S; de Ridder J
    Metabolomics; 2020 Sep; 16(9):99. PubMed ID: 32915321
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation.
    Biswas A; Mynampati KC; Umashankar S; Reuben S; Parab G; Rao R; Kannan VS; Swarup S
    Bioinformatics; 2010 Oct; 26(20):2639-40. PubMed ID: 20702401
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Database-Assisted Globally Optimized Targeted Mass Spectrometry (dGOT-MS): Broad and Reliable Metabolomics Analysis with Enhanced Identification.
    Shi X; Wang S; Jasbi P; Turner C; Hrovat J; Wei Y; Liu J; Gu H
    Anal Chem; 2019 Nov; 91(21):13737-13745. PubMed ID: 31556994
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Overview of Tandem Mass Spectral and Metabolite Databases for Metabolite Identification in Metabolomics.
    Yi Z; Zhu ZJ
    Methods Mol Biol; 2020; 2104():139-148. PubMed ID: 31953816
    [TBL] [Abstract][Full Text] [Related]  

  • 13. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
    Zuffa S; Schmid R; Bauermeister A; P Gomes PW; Caraballo-Rodriguez AM; El Abiead Y; Aron AT; Gentry EC; Zemlin J; Meehan MJ; Avalon NE; Cichewicz RH; Buzun E; Terrazas MC; Hsu CY; Oles R; Ayala AV; Zhao J; Chu H; Kuijpers MCM; Jackrel SL; Tugizimana F; Nephali LP; Dubery IA; Madala NE; Moreira EA; Costa-Lotufo LV; Lopes NP; Rezende-Teixeira P; Jimenez PC; Rimal B; Patterson AD; Traxler MF; Pessotti RC; Alvarado-Villalobos D; Tamayo-Castillo G; Chaverri P; Escudero-Leyva E; Quiros-Guerrero LM; Bory AJ; Joubert J; Rutz A; Wolfender JL; Allard PM; Sichert A; Pontrelli S; Pullman BS; Bandeira N; Gerwick WH; Gindro K; Massana-Codina J; Wagner BC; Forchhammer K; Petras D; Aiosa N; Garg N; Liebeke M; Bourceau P; Kang KB; Gadhavi H; de Carvalho LPS; Silva Dos Santos M; Pérez-Lorente AI; Molina-Santiago C; Romero D; Franke R; Brönstrup M; Vera Ponce de León A; Pope PB; La Rosa SL; La Barbera G; Roager HM; Laursen MF; Hammerle F; Siewert B; Peintner U; Licona-Cassani C; Rodriguez-Orduña L; Rampler E; Hildebrand F; Koellensperger G; Schoeny H; Hohenwallner K; Panzenboeck L; Gregor R; O'Neill EC; Roxborough ET; Odoi J; Bale NJ; Ding S; Sinninghe Damsté JS; Guan XL; Cui JJ; Ju KS; Silva DB; Silva FMR; da Silva GF; Koolen HHF; Grundmann C; Clement JA; Mohimani H; Broders K; McPhail KL; Ober-Singleton SE; Rath CM; McDonald D; Knight R; Wang M; Dorrestein PC
    Nat Microbiol; 2024 Feb; 9(2):336-345. PubMed ID: 38316926
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Optimizing targeted/untargeted metabolomics by automating gas chromatography/mass spectrometry workflows.
    Robbat A; Kfoury N; Baydakov E; Gankin Y
    J Chromatogr A; 2017 Jul; 1505():96-105. PubMed ID: 28533028
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites.
    Mahieu NG; Patti GJ
    Anal Chem; 2017 Oct; 89(19):10397-10406. PubMed ID: 28914531
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An integrated strategy to improve data acquisition and metabolite identification by time-staggered ion lists in UHPLC/Q-TOF MS-based metabolomics.
    Wang Y; Feng R; He C; Su H; Ma H; Wan JB
    J Pharm Biomed Anal; 2018 Aug; 157():171-179. PubMed ID: 29802989
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Advancing untargeted metabolomics using data-independent acquisition mass spectrometry technology.
    Wang R; Yin Y; Zhu ZJ
    Anal Bioanal Chem; 2019 Jul; 411(19):4349-4357. PubMed ID: 30847570
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Untargeted Metabolomics Relative Quantification by SWATH Mass Spectrometry Applied to Cerebrospinal Fluid.
    Mendes VM; Coelho M; Manadas B
    Methods Mol Biol; 2019; 2044():321-336. PubMed ID: 31432422
    [TBL] [Abstract][Full Text] [Related]  

  • 19. De Novo Molecular Formula Annotation and Structure Elucidation Using SIRIUS 4.
    Ludwig M; Fleischauer M; Dührkop K; Hoffmann MA; Böcker S
    Methods Mol Biol; 2020; 2104():185-207. PubMed ID: 31953819
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow.
    Chen G; Walmsley S; Cheung GCM; Chen L; Cheng CY; Beuerman RW; Wong TY; Zhou L; Choi H
    Anal Chem; 2017 May; 89(9):4897-4906. PubMed ID: 28391692
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.