122 related articles for article (PubMed ID: 22967953)
1. The different proteomes of Chlamydomonas reinhardtii.
Valledor L; Recuenco-Munoz L; Egelhofer V; Wienkoop S; Weckwerth W
J Proteomics; 2012 Oct; 75(18):5883-7. PubMed ID: 22967953
[TBL] [Abstract][Full Text] [Related]
2. Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses.
Wienkoop S; Weiss J; May P; Kempa S; Irgang S; Recuenco-Munoz L; Pietzke M; Schwemmer T; Rupprecht J; Egelhofer V; Weckwerth W
Mol Biosyst; 2010 Jun; 6(6):1018-31. PubMed ID: 20358043
[TBL] [Abstract][Full Text] [Related]
3. Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering.
Wang H; Alvarez S; Hicks LM
J Proteome Res; 2012 Jan; 11(1):487-501. PubMed ID: 22059437
[TBL] [Abstract][Full Text] [Related]
4. Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome.
Specht M; Stanke M; Terashima M; Naumann-Busch B; Janssen I; Höhner R; Hom EF; Liang C; Hippler M
Proteomics; 2011 May; 11(9):1814-23. PubMed ID: 21432999
[TBL] [Abstract][Full Text] [Related]
5. pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.
Baerenfaller K; Hirsch-Hoffmann M; Svozil J; Hull R; Russenberger D; Bischof S; Lu Q; Gruissem W; Baginsky S
Integr Biol (Camb); 2011 Mar; 3(3):225-37. PubMed ID: 21264403
[TBL] [Abstract][Full Text] [Related]
6. Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.
Müller SA; Findeiß S; Pernitzsch SR; Wissenbach DK; Stadler PF; Hofacker IL; von Bergen M; Kalkhof S
J Proteomics; 2013 Jun; 86():27-42. PubMed ID: 23665149
[TBL] [Abstract][Full Text] [Related]
7. Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii.
Allmer J; Naumann B; Markert C; Zhang M; Hippler M
Proteomics; 2006 Dec; 6(23):6207-20. PubMed ID: 17078018
[TBL] [Abstract][Full Text] [Related]
8. Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics.
McAfee A; Harpur BA; Michaud S; Beavis RC; Kent CF; Zayed A; Foster LJ
J Proteome Res; 2016 Feb; 15(2):411-21. PubMed ID: 26718741
[TBL] [Abstract][Full Text] [Related]
9. Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments.
Krug K; Carpy A; Behrends G; Matic K; Soares NC; Macek B
Mol Cell Proteomics; 2013 Nov; 12(11):3420-30. PubMed ID: 23908556
[TBL] [Abstract][Full Text] [Related]
10. Functional annotation of the human chromosome 7 "missing" proteins: a bioinformatics approach.
Ranganathan S; Khan JM; Garg G; Baker MS
J Proteome Res; 2013 Jun; 12(6):2504-10. PubMed ID: 23308364
[TBL] [Abstract][Full Text] [Related]
11. Comparative genomics of Chlamydomonas.
Craig RJ; Hasan AR; Ness RW; Keightley PD
Plant Cell; 2021 May; 33(4):1016-1041. PubMed ID: 33793842
[TBL] [Abstract][Full Text] [Related]
12. EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptome.
Jain M; Shrager J; Harris EH; Halbrook R; Grossman AR; Hauser C; Vallon O
Nucleic Acids Res; 2007; 35(6):2074-83. PubMed ID: 17355987
[TBL] [Abstract][Full Text] [Related]
13. Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics.
Ding J; Li X; Hu H
Plant Physiol; 2012 Oct; 160(2):613-23. PubMed ID: 22915576
[TBL] [Abstract][Full Text] [Related]
14. Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.
Lopez D; Casero D; Cokus SJ; Merchant SS; Pellegrini M
BMC Bioinformatics; 2011 Jul; 12():282. PubMed ID: 21749710
[TBL] [Abstract][Full Text] [Related]
15. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
[TBL] [Abstract][Full Text] [Related]
16. Quantitative shotgun proteomics using a uniform ¹⁵N-labeled standard to monitor proteome dynamics in time course experiments reveals new insights into the heat stress response of Chlamydomonas reinhardtii.
Mühlhaus T; Weiss J; Hemme D; Sommer F; Schroda M
Mol Cell Proteomics; 2011 Sep; 10(9):M110.004739. PubMed ID: 21610104
[TBL] [Abstract][Full Text] [Related]
17. PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.
Kim T; Kim E; Park SJ; Joo H
Comput Biol Med; 2009 Aug; 39(8):689-96. PubMed ID: 19541297
[TBL] [Abstract][Full Text] [Related]
18. ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
Cifani P; Dhabaria A; Chen Z; Yoshimi A; Kawaler E; Abdel-Wahab O; Poirier JT; Kentsis A
J Proteome Res; 2018 Nov; 17(11):3681-3692. PubMed ID: 30295032
[TBL] [Abstract][Full Text] [Related]
19. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii.
May P; Wienkoop S; Kempa S; Usadel B; Christian N; Rupprecht J; Weiss J; Recuenco-Munoz L; Ebenhöh O; Weckwerth W; Walther D
Genetics; 2008 May; 179(1):157-66. PubMed ID: 18493048
[TBL] [Abstract][Full Text] [Related]
20. Navigating through metaproteomics data: a logbook of database searching.
Muth T; Kolmeder CA; Salojärvi J; Keskitalo S; Varjosalo M; Verdam FJ; Rensen SS; Reichl U; de Vos WM; Rapp E; Martens L
Proteomics; 2015 Oct; 15(20):3439-53. PubMed ID: 25778831
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]