193 related articles for article (PubMed ID: 22972939)
1. SOAPindel: efficient identification of indels from short paired reads.
Li S; Li R; Li H; Lu J; Li Y; Bolund L; Schierup MH; Wang J
Genome Res; 2013 Jan; 23(1):195-200. PubMed ID: 22972939
[TBL] [Abstract][Full Text] [Related]
2. The challenge of detecting indels in bacterial genomes from short-read sequencing data.
Steglich M; Nübel U
J Biotechnol; 2017 May; 250():11-15. PubMed ID: 28267569
[TBL] [Abstract][Full Text] [Related]
3. IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis.
Shigemizu D; Miya F; Akiyama S; Okuda S; Boroevich KA; Fujimoto A; Nakagawa H; Ozaki K; Niida S; Kanemura Y; Okamoto N; Saitoh S; Kato M; Yamasaki M; Matsunaga T; Mutai H; Kosaki K; Tsunoda T
Sci Rep; 2018 Apr; 8(1):5608. PubMed ID: 29618752
[TBL] [Abstract][Full Text] [Related]
4. MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.
Marschall T; Hajirasouliha I; Schönhuth A
Bioinformatics; 2013 Dec; 29(24):3143-50. PubMed ID: 24072733
[TBL] [Abstract][Full Text] [Related]
5. Uncovering missed indels by leveraging unmapped reads.
Hasan MS; Wu X; Zhang L
Sci Rep; 2019 Jul; 9(1):11093. PubMed ID: 31366961
[TBL] [Abstract][Full Text] [Related]
6. Dindel: accurate indel calls from short-read data.
Albers CA; Lunter G; MacArthur DG; McVean G; Ouwehand WH; Durbin R
Genome Res; 2011 Jun; 21(6):961-73. PubMed ID: 20980555
[TBL] [Abstract][Full Text] [Related]
7. Performance evaluation of indel calling tools using real short-read data.
Hasan MS; Wu X; Zhang L
Hum Genomics; 2015 Aug; 9(1):20. PubMed ID: 26286629
[TBL] [Abstract][Full Text] [Related]
8. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
Lv Y; Liu Y; Zhao H
BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
[TBL] [Abstract][Full Text] [Related]
9. Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data.
Kim BY; Park JH; Jo HY; Koo SK; Park MH
PLoS One; 2017; 12(8):e0182272. PubMed ID: 28792971
[TBL] [Abstract][Full Text] [Related]
10. Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.
Li H
Bioinformatics; 2012 Jul; 28(14):1838-44. PubMed ID: 22569178
[TBL] [Abstract][Full Text] [Related]
11. A universal algorithm for de novo decrypting of heterozygous indel sequences: a tool for personalized medicine.
Lam CW
Clin Chim Acta; 2008 Mar; 389(1-2):7-13. PubMed ID: 18078814
[TBL] [Abstract][Full Text] [Related]
12. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
[TBL] [Abstract][Full Text] [Related]
13. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.
Bansal V; Libiger O
Bioinformatics; 2011 Aug; 27(15):2047-53. PubMed ID: 21653520
[TBL] [Abstract][Full Text] [Related]
14. High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array.
Mabire C; Duarte J; Darracq A; Pirani A; Rimbert H; Madur D; Combes V; Vitte C; Praud S; Rivière N; Joets J; Pichon JP; Nicolas SD
BMC Genomics; 2019 Nov; 20(1):848. PubMed ID: 31722668
[TBL] [Abstract][Full Text] [Related]
15. ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly.
Yang R; Nelson AC; Henzler C; Thyagarajan B; Silverstein KA
Genome Med; 2015 Dec; 7():127. PubMed ID: 26643039
[TBL] [Abstract][Full Text] [Related]
16. Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph.
Martiniano R; Garrison E; Jones ER; Manica A; Durbin R
Genome Biol; 2020 Sep; 21(1):250. PubMed ID: 32943086
[TBL] [Abstract][Full Text] [Related]
17. Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data.
Kadri S; Zhen CJ; Wurst MN; Long BC; Jiang ZF; Wang YL; Furtado LV; Segal JP
J Mol Diagn; 2015 Nov; 17(6):635-43. PubMed ID: 26319364
[TBL] [Abstract][Full Text] [Related]
18. Comparative assessments of indel annotations in healthy and cancer genomes with next-generation sequencing data.
Chen J; Guo JT
BMC Med Genomics; 2020 Nov; 13(1):170. PubMed ID: 33167946
[TBL] [Abstract][Full Text] [Related]
19. Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes.
Yeo ZX; Wong JC; Rozen SG; Lee AS
BMC Genomics; 2014 Jun; 15(1):516. PubMed ID: 24962530
[TBL] [Abstract][Full Text] [Related]
20. Accurate indel prediction using paired-end short reads.
Grimm D; Hagmann J; Koenig D; Weigel D; Borgwardt K
BMC Genomics; 2013 Feb; 14():132. PubMed ID: 23442375
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]